BAC Information

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BAC

Clone NameMSMg01-056E13
Chromosome19 (Build37)
Map Location 55,847,650 - 55,848,018
singlet/doubletsinglet
Overlap geneTcf7l2
Upstream geneGpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479
Downstream genePpnr, LOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056E13.T7 (MSMg01no056_e13.b1)MSMg01-056E13.TJ (MSMg01no056_e13.g1)
ACCAG283730AG283731
length702709
length of high quality
(start - end)
158 (155 - 312)369 (75 - 443)
definitionCHROMAT_FILE: MSMg01no056_e13.b1 PHD_FILE: MSMg01no056_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:54 2005CHROMAT_FILE: MSMg01no056_e13.g1 PHD_FILE: MSMg01no056_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAGAGGATCCGCGGAAT
TCTCTGTTCCCCGATATCACTGTGGCCATTATTTCTAGGAAAGAAGGGCA
GTCTGAGTTATCCTGACGTCCCTTACTGCCCTTTGCATTTGTAGAATGCA
ATAGATGCTCCAGAGAAAAAGGAATAGGATCTATATCCACGGAGAGGGGG
TAGAAGGAAGAGAAATGTTGGAAGGAGTGGAGCAACCTGCATCACGTGAT
TACAGGGGACCAGAAATCCCCCATCCTGCCCTGCGAGCTGGAGAACCGTG
AAGGCTGACATCCTTCATGCCTGAACTCAAGACCTGAGAACAGAGGACTC
AGGTGCGGGTCCCATTCTAACGTCAAGAACTCTGAGAGCCGCCACGTCCA
ATCCCAGTCCCAGGAGAAAATGGACAGTGAAGGAGCAGCCGGGCCCTTCC
CCCATCCTGTTGGCACCTTCGGACTCCGTAGATGGCAGAACACGACATTC
ATTCCTAATCTCTGACTCATGCTAGTTTGCTCTGGAGACCACCTCCTGCT
GATACACCCAGAGCTATTTTATCCTCTCCCAGCCCCGTGGCGCTGACCAC
TGATATTTACCCTCCCCTAAAGAGATTTATGGGTTCCTAAGTTTCTTTAC
CCTGTAATGCTCTGAAAGCCTGTTTGTATTTCCCATGGAAGTTTAGCCCT
AA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCCCTGATGGCTCTGAGAAGCAGAA
GAAAGGTACCCATAAAAGATGCAGTGAGAAGACATAGGAAAGTCCACTAT
ATAGTCTATCTACTTTGCGAAAGGAAGAATGAGCCAAGGAACCCAAGCTG
CTCTGTGACCCGGAGTACAGTGCTGCTCCCTTCAGACAACAGTAACCACT
GTTGCTTGGTGCTGGCCCCTACATCCAGGATGCTTGAATGCTGTCTCATT
TAACCCTAAACAAAACTGTATTATGGCTAAACTCACCCACAGAGCAGTGA
AGTATCTAACTGGCTGTGAGCTGCAGTCAGTAGAGGGCTCTGGTCACATC
CCTCCTTTCCACAACAAAAGACTTTCACTTTCATGGTTCTGAGATCAAAC
CCAGGTCCTTCCTTATATATGTAGAACAGGTACTAGTCCAATGAGCTACA
CTTGTATGCCCACAGGAAAGCTTTTTAAAGACACAAGAATGTTCTTCTGG
CTTCTCATTGGCTCTGCTACTACACACATCCTATAGAGGCATTTCACGGC
TGAGTAAGGAAGAATCAGCCATGCCGCCTCATTTCAGGTCATTGTAGGCT
CACCTCCTTGCCTTTATCATCCATAACTAATTCCTTCTGCAGCCCCTTAA
CATAAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_e13.g1 MSMg01no056_e13.g1 CHROMAT_FILE:
MSMg01no056_e13.g1 PHD_FILE: MSMg01no056_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:54 2005
         (369 letters)



>mm_chr19_55847450_55848218
          Length = 769

 Score =  659 bits (341), Expect = 0.0
 Identities = 362/369 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccctgatggctctgagaagcagaagaaaggtacccataaaagatgcagtgagaagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 569 acccctgatggctctgagaagcagaagaaaggtacccataaaagatggagtgagaagaca 510

                                                                       
Query: 61  taggaaagtccactatatagtctatctactttgcgaaaggaagaatgagccaaggaaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 taggaaagtccactatatagtctatctactttgcgaaaggaagaatgagccaaggaaccc 450

                                                                       
Query: 121 aagctgctctgtgacccggagtacagtgctgctcccttcagacaacagtaaccactgttg 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 449 aagctgctctgtgacccggagtacagtgctgctccctgcagacaacagtaaccactgttg 390

                                                                       
Query: 181 cttggtgctggcccctacatccaggatgcttgaatgctgtctcatttaaccctaaacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 389 cttggtgctggcccctacatccaggatgcttgaatgctgtctcatttaaccctaaatgaa 330

                                                                       
Query: 241 actgtattatggctaaactcacccacagagcagtgaagtatctaactggctgtgagctgc 300
           |||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 329 actgcactatggctaaactcatccacagagcagtgaagtatctaactggctgtgagctgc 270

                                                                       
Query: 301 agtcagtagagggctctggtcacatccctcctttccacaacaaaagactttcactttcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agtcagtagagggctctggtcacatccctcctttccacaacaaaagactttcactttcat 210

                    
Query: 361 ggttctgag 369
           |||||||||
Sbjct: 209 ggttctgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)