BAC Information

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BAC

Clone NameMSMg01-057G11
Chromosome19 (Build37)
Map Location 44,552,665 - 44,568,498
singlet/doubletdoublet
Overlap geneWnt8b
Upstream geneCnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1
Downstream geneSec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057G11.T7 (MSMg01no057_g11.b1)MSMg01-057G11.TJ (MSMg01no057_g11.g1)
ACCAG284567AG284568
length705704
length of high quality
(start - end)		637 (69 - 705)634 (71 - 704)
definitionCHROMAT_FILE: MSMg01no057_g11.b1 PHD_FILE: MSMg01no057_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:20 2005CHROMAT_FILE: MSMg01no057_g11.g1 PHD_FILE: MSMg01no057_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,567,860 - 44,568,498)(44,552,665 - 44,553,297)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGGATCCGCGGAATT
CTGAAGCTTACCAGAAAGTGTAGAATCAGCTTCAGCCCATCCTATCTCCA
GCAGCATGAGCACAGGGAGCCTGCCCTGGCGCATCTCTCCGGCCACAGCG
GGGTCAGGAGTTAATGCTCCAGGCTACTCTGTCTCTCCCCAGACCACTTG
AAATCTGTAGTATGATCATTTATAAAAAAAATATACAAAGTCCCTCATTT
TTAAGTCCCAATCTTTTATTGGCAAGAATCCTAAAGCTCTGCGGAGGCCA
GCCGCACACTTAGGGATTTCTCTATCGCATAGAATGGCTTTTCCCAAGAC
AGAGCTTAAGGCCTTGATTTCTCCAGCACATCCCACACCCAAGCAGGTTA
CTCACCAGGCGTGGCTGCGGTGAAGGACACAAGTGACTAGAAGAACGCAC
ACGGGCTTCATAAGAAACATGGTCTTCGGAGAAAGGCAGGGTGAGCGACT
CAAACCTTGAGAGATGGGAAGCATTCTCCTCGGAGGCAGAGGGATGGCTA
CCTTGGTGTGTAAGCGATCCCAAACAGTGTTAAGGGGTGGTGAAATGAAG
CCACCTCACATCTAAAGAAGAGATTATCTACTTAATTAAAGTTGTTCCCT
CTAAGTCCTTCAGCCAATCAGAACTCAAGTGCCAGAGAAAGATTGAGCTG
ATCAN

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGGCGTGCGCTATCATGCCCACTGGCCCT
CAACCTTTTCATAATCTTTGTCCATGGGGCCCACATATCATACATAGCCT
CTTATGAATATATTTGGGTATTCAGGTTCAGCAGAGCAGAAGATTTGAAA
GTACCGAAGAACGTAGATCCTAGAATCTCCCACCTGGTTTTTGGTCACTC
CTCTCAGAGCAGGTTATAGGAATGAGTCTGAAATTTCAGTGGCCAGGCCA
GCCAAATAATAGTAAGGGGCTGGTTCCATGAGTAAAGGTGTTAGCCACAC
AATCCTGATGATAGGGCTTCATTCCCTGGAACCTACATTAACAGCGAAAG
GAAAAAGGAAAACCCATCGTAGAAGCACACATCTGTAATCTCAGTCGTCC
TGTGATGAGATGGGAGACAGAGACAGAGTTGCCTAAGTCACTTACAGACC
AACTAGCCTGAAGGAAACATGGCACGCGCAGAAACAAGAAAGATCCTGCT
TCAACAAGGTGGAAGGCAAGAGCCAACATGTGGATCCTGGGAATCAAACC
TGGGTCCTCTGCAAGAGCAGCAAGCACTCTTAACCTCCAAGCCCCGCCGA
CAGTTCCTGCTCATGGAAAGTTTATGTCTCTAANAATTCAGAAACTTCTG
TAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_g11.b1 MSMg01no057_g11.b1 CHROMAT_FILE:
MSMg01no057_g11.b1 PHD_FILE: MSMg01no057_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:20 2005
         (637 letters)



>mm_chr19_44567660_44568699
          Length = 1040

 Score = 1143 bits (591), Expect = 0.0
 Identities = 626/639 (97%), Gaps = 3/639 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtagaatcagcttcagcccatcctatctccagcagcatgagcacagggagcctgccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 tgtagaatcagcttcagcccatcctatctccagcagcatgagcacagggagcctgccctg 780

                                                                       
Query: 61  gcgcatctctccggccacagcggggtcaggagttaatgctccaggctactctgtctctcc 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gcgcatctctccagccacagcggggtcaggagttaatgctccaggctactctgtctctcc 720

                                                                       
Query: 121 ccagaccacttgaaatctgtagtatgatcatttataaaaaaaatatacaaagtccctcat 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 719 ccagaccacttgaaatctgtagtatgatcatttattaaaaaaatatacaaagtacctcat 660

                                                                       
Query: 181 ttttaagtcccaatcttttattggcaagaatcctaaagctctgcggaggccagccgcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ttttaagtcccaatcttttattggcaagaatcctaaagctctgcggaggccagccgcaca 600

                                                                       
Query: 241 cttagggatttctctatcgcatagaatggcttttcccaagacagagcttaagg---cctt 297
           ||||||||   | |||||||| |||||||||||||||||||||||||||||||   ||||
Sbjct: 599 cttagggacagccctatcgcacagaatggcttttcccaagacagagcttaaggcctcctt 540

                                                                       
Query: 298 gatttctccagcacatcccacacccaagcaggttactcaccaggcgtggctgcggtgaag 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gatttctccagcacatcccacacccaagcaggttactcaccaggcgtggctgcggtgaag 480

                                                                       
Query: 358 gacacaagtgactagaagaacgcacacgggcttcataagaaacatggtcttcggagaaag 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gacacaagtgactagaagaacgcacacgggcttcataagaaacatggtcttcggagaaag 420

                                                                       
Query: 418 gcagggtgagcgactcaaaccttgagagatgggaagcattctcctcggaggcagagggat 477
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 419 gcagggtgagcgactcaaacattgagagatgggaagcattctcctcggaggcagaggggt 360

                                                                       
Query: 478 ggctaccttggtgtgtaagcgatcccaaacagtgttaaggggtggtgaaatgaagccacc 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggctaccttggtgtgtaagcgatcccaaacagtgttaaggggtggtgaaatgaagccacc 300

                                                                       
Query: 538 tcacatctaaagaagagattatctacttaattaaagttgttccctctaagtccttcagcc 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tcacatctaaagaagagattatctacttaattaaagttgttccctctaagtccttcagcc 240

                                                  
Query: 598 aatcagaactcaagtgccagagaaagattgagctgatca 636
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aatcagaactcaagtgccagagaaagattgagctgatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1040
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1030
Effective search space:   645810
Effective search space used:   645810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no057_g11.g1 MSMg01no057_g11.g1 CHROMAT_FILE:
MSMg01no057_g11.g1 PHD_FILE: MSMg01no057_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:20 2005
         (634 letters)



>mm_chr19_44552465_44553498
          Length = 1034

 Score = 1180 bits (610), Expect = 0.0
 Identities = 627/633 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcgtgcgctatcatgcccactggccctcaaccttttcataatctttgtccatggggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggcgtgcgctatcatgcccactggccctcaaccttttcataatctttgtccatggggc 260

                                                                       
Query: 61  ccacatatcatacatagcctcttatgaatatatttgggtattcaggttcagcagagcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacatatcatacatagcctcttatgaatatatttgggtattcaggttcagcagagcaga 320

                                                                       
Query: 121 agatttgaaagtaccgaagaacgtagatcctagaatctcccacctggtttttggtcactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatttgaaagtaccgaagaacgtagatcctagaatctcccacctggtttttggtcactc 380

                                                                       
Query: 181 ctctcagagcaggttataggaatgagtctgaaatttcagtggccaggccagccaaataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcagagcaggttataggaatgagtctgaaatttcagtggccaggccagccaaataat 440

                                                                       
Query: 241 agtaaggggctggttccatgagtaaaggtgttagccacacaatcctgatgatagggcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 agtaaggggctggttccatgagtaaaggtgttagccacacaatcctgatgacagggcttc 500

                                                                       
Query: 301 attccctggaacctacattaacagcgaaaggaaaaaggaaaacccatcgtagaagcacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attccctggaacctacattaacagcgaaaggaaaaaggaaaacccatcgtagaagcacac 560

                                                                       
Query: 361 atctgtaatctcagtcgtcctgtgatgagatgggagacagagacagagttgcctaagtca 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctgtaatctcagtcatcctgtgatgagatgggagacagagacagagttgcctaagtca 620

                                                                       
Query: 421 cttacagaccaactagcctgaaggaaacatggcacgcgcagaaacaagaaagatcctgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttacagaccaactagcctgaaggaaacatggcacgcgcagaaacaagaaagatcctgct 680

                                                                       
Query: 481 tcaacaaggtggaaggcaagagccaacatgtggatcctgggaatcaaacctgggtcctct 540
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 tcaacaaggtggaaggcaagagccaacatgtggatgctgggaatcaaacctgggtcctct 740

                                                                       
Query: 541 gcaagagcagcaagcactcttaacctccaagccccgccgacagttcctgctcatggaaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 741 gcaagagcagcaagcactcttaacctccaagccccgccgacagttcctgctcatgaaaag 800

                                            
Query: 601 tttatgtctctaanaattcagaaacttctgtag 633
           ||||||| ||||| |||||||||||||||||||
Sbjct: 801 tttatgtttctaaaaattcagaaacttctgtag 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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