Query= MSMg01no057_g14.b1 MSMg01no057_g14.b1 CHROMAT_FILE:
MSMg01no057_g14.b1 PHD_FILE: MSMg01no057_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:21 2005
(526 letters)
>mm_chr19_8337239_8338163
Length = 925
Score = 957 bits (495), Expect = 0.0
Identities = 518/529 (97%), Gaps = 7/529 (1%)
Strand = Plus / Plus
Query: 1 aagctgaataactatctacaaagagggacaaataatactttcctatagaaaagtattagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagctgaataactatctacaaagagggacaaataatactttcctatagaaaagtattagt 260
Query: 61 acaaagcatttaaaaattatatttaacaaagacaccctaaatagtgttgatcctgagctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaagcatttaaaaattatatttaacaaagacaccctaaatagtgttgatcctgagctg 320
Query: 121 ttcttcatgtgtccctactaacttctgcattgctgtcatagaaaaattatcctttagtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttcatgtgtccctactaacttctgcattgctgtcatagaaaaattatcctttagtga 380
Query: 181 gctaacaaaagtttaaaatgtccgtgccattagtaatgaacttctctctctttagcttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctaacaaaagtttaaaatgtccgtgccattagtaatgaacttctctctctttagcttct 440
Query: 241 tctaaagtcaacaagcttcctatcattgtttctatttcagcaattgaacttgttaaagat 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaaagtcaacaagcttcctaccattgtttctatttcagcaattgaacttgttaaagat 500
Query: 301 ttattttaaaaggtattttgtttacacaatgctccgtggtcaaatatggacacccc---a 357
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 ttattttaaaaggtattttgtttacacaatgctccgtggtcaaatatggaca----ttga 556
Query: 358 tctgcaaatctcaggaatcaaaaaagttaaactataacatgttatgccttgcagaacatg 417
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 557 tctgcaaatctcaggaatcaaaaaagttaaactataacatgttatgccttacagaacatg 616
Query: 418 caatttaaaaggctccaaggtgacccattttattttttattcaatgcattgtgtttaata 477
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 617 caatttaaaaggctccaaggtgacccattttattttttattcaatgtattgtgtttaata 676
Query: 478 ttaaagcttgctaaaagagtaaaggaatagaattaaagttaaattagtt 526
|||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 677 ttaaagcttgctaaaagagttaaggaatagaattaaagttaaattagtt 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 925
Length adjustment: 10
Effective length of query: 516
Effective length of database: 915
Effective search space: 472140
Effective search space used: 472140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_g14.g1 MSMg01no057_g14.g1 CHROMAT_FILE:
MSMg01no057_g14.g1 PHD_FILE: MSMg01no057_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:21 2005
(446 letters)
>mm_chr19_8460199_8461044
Length = 846
Score = 816 bits (422), Expect = 0.0
Identities = 440/446 (98%)
Strand = Plus / Minus
Query: 1 tgtgacaataatgaacaggtacaaggacaaaagaaatgcagttctctttagtctacacct 60
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 646 tgtgacaataatgaacaggtataaggacaaaagaaatgcatttctctttagtctacacct 587
Query: 61 aatagtgtgtgcttctctttgtaattatgggacaggaggacaagaaccactgtcagataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aatagtgtgtgcttctctttgtaattatgggacaggaggacaagaaccactgtcagataa 527
Query: 121 gactgagggaactgaattctgcctaaacttgaggtaaacattaaataattttataaaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gactgagggaactgaattctgcctaaacttgaggtaaacattaaataattttataaaatc 467
Query: 181 atacacaagtgtgacaaaagttactggtacattgaaggattcgcttcttatacaaaagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 atacacaagtgtgacaaaagttactggtacattgaaggattcgcttcttatacaaaagtt 407
Query: 241 gtgtttaactgctaattctgtatttcactaattaagtagatgaaatgtatggcatctaaa 300
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 406 gtgtttaactgcaaattctgtatttcactaattaagtagatgaaatgtatgacatctaaa 347
Query: 301 taagttcatattatgaataaacatttaatactaaagtaagtataccgaacatattgaata 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 346 taagttcatattatgaataaacatttaatactaaagtaagtatattgaacatattgaata 287
Query: 361 tgttattctagtagaaaaatatacactgtttattagttaagttcttttatgcagagttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tgttattctagtagaaaaatatacactgtttattagttaagttcttttatgcagagttta 227
Query: 421 agtttctttggtaggaaaaacaaaac 446
||||||||||||||||||||||||||
Sbjct: 226 agtttctttggtaggaaaaacaaaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
