Query= MSMg01no058_j06.b1 MSMg01no058_j06.b1 CHROMAT_FILE:
MSMg01no058_j06.b1 PHD_FILE: MSMg01no058_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:51 2005
(243 letters)
>mm_chr19_10071387_10072029
Length = 643
Score = 424 bits (219), Expect = e-123
Identities = 237/243 (97%)
Strand = Plus / Plus
Query: 1 tgctgcctcgccagcacaggaggagggacgagaacgaaccgaggcgcccattggctactt 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tgctgcctcgccagcacaggaggagggacgagaacgaaccgaggcgggcattggctactt 260
Query: 61 tgtttgtgtaggtgatagtcatggcttggcactgggcagcagtaggtgggcttgggtcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtttgtgtaggtgatagtcatggcttggcactgggcagcagtaggtgggcttgggtcct 320
Query: 121 ggtgagcaggcagagtgatgtgggaatggataggagtcaaagactaggttctgatcttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgagcaggcagagtgatgtgggaatggataggagtcaaagactaggttctgatcttgg 380
Query: 181 acttgcatgagtttagtccggccctaccctgggcctctattttctagcccgggacacaga 240
||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||
Sbjct: 381 acttgcatgagtttagtcctaccctaccctgggcctctattttctagcctgagacacaga 440
Query: 241 agg 243
|||
Sbjct: 441 agg 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no058_j06.g1 MSMg01no058_j06.g1 CHROMAT_FILE:
MSMg01no058_j06.g1 PHD_FILE: MSMg01no058_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:51 2005
(480 letters)
>mm_chr19_10153881_10154764
Length = 884
Score = 830 bits (429), Expect = 0.0
Identities = 451/459 (98%), Gaps = 4/459 (0%)
Strand = Plus / Minus
Query: 26 tcccat-ccacttctcc-atgctgggatgctggcttttggagggagattgtgggaggttg 83
|||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 684 tcccatcccacttctccaatgctgggatgttggcttttggagggagattgtgggaggttg 625
Query: 84 ctgatccaaatggcagtggcatttgaagatggcggctagcatcaccatagaaagtctctc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgatccaaatggcagtggcatttgaagatggcggctagcatcaccatagaaagtctctc 565
Query: 144 tcgggcattcaggtgatcacaagagaaaccccatgtttcctgggtttctggtttaacttt 203
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcgggcattcagacgatcacaagagaaaccccatgtttcctgggtttctggtttaacttt 505
Query: 204 gtgcaagtgccccagagaccatgctggctgaaaggagccctggtctctacttgaagtgac 263
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtgcaagtgcccaagagaccatgctggctgaaaggagccctggtctctacttgaagtgac 445
Query: 264 agtccagcccatctc--gagagccccaatcatcccaacaggaattgattcctgacaaggc 321
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtccagcccatctcaagagagccccaatcatcccaacaggaattgattcctgacaaggc 385
Query: 322 ctttatctcagtgtagatgaccagagcagaccagccacaagggcatttgactcacagaaa 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttatctcagtgtagatgaccagagcagaccagccacaagggcatttgactcacagaaa 325
Query: 382 tgttaagagcagacttccaccatctggtcatatttatgatttctgggagggcgttctgag 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgttaagagcagacttccaccatctggtcatatttatgatttctgggagggcgttctgag 265
Query: 442 tttgttttatgtggcagtatgcattcagtttcttttcgg 480
|||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttgttttatgtggcagtatgcattcagtttcttttcgg 226
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 884
Length adjustment: 10
Effective length of query: 470
Effective length of database: 874
Effective search space: 410780
Effective search space used: 410780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
