Query= MSMg01no058_n23.b1 MSMg01no058_n23.b1 CHROMAT_FILE:
MSMg01no058_n23.b1 PHD_FILE: MSMg01no058_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:14 2005
(102 letters)
>mm_chr19_36491785_36492286
Length = 502
Score = 182 bits (94), Expect = 6e-51
Identities = 100/102 (98%)
Strand = Plus / Plus
Query: 1 actcttaactcttttctttgattattgtttcgtacatatgcatgcatatgtatatgcaaa 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcttaacacttttctttgattattgtttcgtacatatgcatgcatatgtatatgcaaa 260
Query: 61 taaataactacaacctgctgaatttgcttttgttatttgtgt 102
||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 taaataaatacaacctgctgaatttgcttttgttatttgtgt 302
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 502
Length adjustment: 8
Effective length of query: 94
Effective length of database: 494
Effective search space: 46436
Effective search space used: 46436
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
| Query= MSMg01no058_n23.g1 MSMg01no058_n23.g1 CHROMAT_FILE:
MSMg01no058_n23.g1 PHD_FILE: MSMg01no058_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:14 2005
(537 letters)
>mm_chr19_36651740_36652675
Length = 936
Score = 967 bits (500), Expect = 0.0
Identities = 527/536 (98%), Gaps = 1/536 (0%)
Strand = Plus / Minus
Query: 1 attcctgaaggagatgaaatctggacatggctatttaaatagtgaagccatagaaactaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 attcctgaaggagatgaaatctggacatggctatttaaatagtgaagccatagaaactaa 676
Query: 61 agtgaaaactgaagacaaccttagatccctagttggtctctctttgtcacagggtcacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 agtgaaaactgaagacaaccttagatccctagttggtctctctttgtcacagggtcacaa 616
Query: 121 tgcctctccattcctactccagtggaaatccggaaatttacattctttggagaggataca 180
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 615 tgcctctccattcctactccagtggaaatccagaaatttacattctttggagagaataca 556
Query: 181 attggcactttggcctgggagaaacgttatctgaagtgataagagcatcaaaaatacggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 attggcactttggcctgggagaaacgttatctgaagtgataagagcatcaaaaatacggg 496
Query: 241 aagaaaatgttaattgctaaattctaaaaatgatcaagaggccactttcatctccacctt 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aagaaaatgctaattgctaaattctaaaaatgatcaagaggccactttcatctccacctt 436
Query: 301 cctaataaatcactcaattcagcttcactttataaggtctcccacccccacaccacgaga 360
|||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||
Sbjct: 435 cctaataaatcactcaattcagcttcacttcataaggcctcccacccc-acaccacgaga 377
Query: 361 gaagatgacagctttcttggagaatctagcatcattattaaaggaaataatgatgttaat 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 376 gaagatgacagctttcttggagaatctagcatcattattaaaagaaataatgatgttaat 317
Query: 421 taatcagatgtccctaaacagaagcctacccacatcatcttatgataaagcttaaggcta 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 taatcagacgtccctaaacagaagcctacccacatcatcttatgataaagcttaaggcta 257
Query: 481 ataaccttacccatgcctcagatttcaattattttgttccttagtgcaaatgatag 536
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 256 ataaccttacccatgcctcagatttcaattattttgttccctagtgcaaatgatag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space: 488002
Effective search space used: 488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
