BAC Information

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BAC

Clone NameMSMg01-058P21
Chromosome19 (Build37)
Map Location 3,915,031 - 4,025,627
singlet/doubletdoublet
Overlap geneAldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1
Upstream geneLOC630980, LOC665804, EG665806, EG665810, LOC100039218, Ighmbp2, Mrpl21, LOC665826, Cpt1a, Mtl5, Gal, Saps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8
Downstream geneGstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058P21.T7 (MSMg01no058_p21.b1)MSMg01-058P21.TJ (MSMg01no058_p21.g1)
ACCAG285776AG285777
length700699
length of high quality
(start - end)
244 (75 - 318)320 (79 - 398)
definitionCHROMAT_FILE: MSMg01no058_p21.b1 PHD_FILE: MSMg01no058_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:23 2005CHROMAT_FILE: MSMg01no058_p21.g1 PHD_FILE: MSMg01no058_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,915,031 - 3,915,274)(4,025,308 - 4,025,627)
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGC
GGAATTCAGTGGTTGCCAACAACTGGTGTGTTTTTATAAACCCACCAACG
TGATCTCTCTGTAGCTTCTCACCCACATGTTTAGTGCAAGCATATCTGCA
AAGTTCCACCACAGACTGTAGGGAGGTGGGAGAGAGGCAGGCTAGTTGGA
CAGTCAGTGGGGAGGGGCTTATGCTGCACTGGGCACTGAGAAGGGGGCAC
ATCTTCTGCAGTTAATGTGGTCAGGTAGCAGGATGGGGATGCAGGTAGGG
GGTCAGCCCAGGAGGGCAGATTTCTGCTGCTACCTACCCACTCCTCCAAA
AGGAAGGCTGTTATTTTTTTCACGCGCCCGAAGCCATCATTCCCACAGAA
GCCCCCGCTGCTGGTCCGGGCCAACACCTGTTTGATAACCTGGGAGAGAA
AAGATGCAAAGCACTCCTGGACGGACCTTGTTTCAGTGAGGGCCAAGGGG
GCCCTAATGGGGCATACTCTCAAACTCCACCCTGGGGCATATTCTCTATG
GATCCACCTGTATGTGTCCCTGACCGGCTGTTGAGGGGACCTGTCACCTC
TACTCTGACGTGCATAGTATGGACACAGTGTTGATGTCATGTCTTGTTAT
GTTTCCCATGGATGTAGAAGGTTAGGCCGATAACTATTGAATCTTAGTAT

NACAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGAAGTTCAGGCAGCGCAAG
CAGAGGGACATGAGGAGGTTTAGTGTCCTGGCTGAAGTGGTAGCTCAGGG
CTGGTGAGGTTGGTGTGCATGACGAGGGCTGGTTCCATGTGTTGAGGCTG
ACGGGTGGAACCATCCATGGTCTCAAAGCAAACCTGAATGGTGCTTTGTG
AGTCTCAGGACACAGGGTAGCGGTGGGCAGTGCGAGGCATCAGTAAGAAG
GACAAGGAAATGGGCCAGCATGCCTTCTGTCCCTGCCCTGCTCTGCTGCA
GGGAGGCTACTGTCCTGGTGGGAATTTCATCCCCTCCTTTTGAGATAGGA
AAAAAAGGAAATAAAACAATATCTTTCAAATGTCTTCAACTCAAAATAGT
CACTATGCCAGAGGGGCATGCTTAGGAATGGCATCTTATTCTTTTCATGT
GCACATACATGTGCACATATACTTAGAGATTTATTATAGTGTTCTAGGTC
ACAGGGAGCCTTACAAGGTATCACGGGTAAACTGGAAACCCCGGAAGAGA
TTACCCTGCCCTCCAGGTACTGGCGTCAGGTTCAACATCATAATCTGGGC
TATCCCAATTCTCCACTGCTCCCTCTGATGACCCTTTTTGTTGAAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_p21.b1 MSMg01no058_p21.b1 CHROMAT_FILE:
MSMg01no058_p21.b1 PHD_FILE: MSMg01no058_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:23 2005
         (244 letters)



>mm_chr19_3914831_3915474
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtgtgtttttataaacccaccaacgtgatctctctgtagcttctcacccacatgtttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtgtgtttttataaacccaccaacgtgatctctctgtagcttctcacccacatgtttag 260

                                                                       
Query: 61  tgcaagcatatctgcaaagttccaccacagactgtagggaggtgggagagaggcaggcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcaagcatatctgcaaagttccaccacagactgtagggaggtgggagagaggcaggcta 320

                                                                       
Query: 121 gttggacagtcagtggggaggggcttatgctgcactgggcactgagaagggggcacatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttggacagtcagtggggaggggcttatgctgcactgggcactgagaagggggcacatct 380

                                                                       
Query: 181 tctgcagttaatgtggtcaggtagcaggatggggatgcaggtagggggtcagcccaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgcagttaatgtggtcaggtagcaggatggggatgcaggtagggggtcagcccaggag 440

               
Query: 241 ggca 244
           ||||
Sbjct: 441 ggca 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no058_p21.g1 MSMg01no058_p21.g1 CHROMAT_FILE:
MSMg01no058_p21.g1 PHD_FILE: MSMg01no058_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:23 2005
         (320 letters)



>mm_chr19_4025108_4025827
          Length = 720

 Score =  596 bits (308), Expect = e-175
 Identities = 317/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgaagttcaggcagcgcaagcagagggacatgaggaggtttagtgtcctggctgaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 actgaagttcaggcagcgcaagcagagggacatgaggaggtttagtgtcctggctgaagt 461

                                                                       
Query: 61  ggtagctcagggctggtgaggttggtgtgcatgacgagggctggttccatgtgttgaggc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 460 ggtagctcagggctggtgaggttggtgtggatgacgagggctggttccatgtgttgaggc 401

                                                                       
Query: 121 tgacgggtggaaccatccatggtctcaaagcaaacctgaatggtgctttgtgagtctcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tgacgggtggaaccatccatggtctcaaagcaaacctgaatggtgctttgtgagtctcag 341

                                                                       
Query: 181 gacacagggtagcggtgggcagtgcgaggcatcagtaagaaggacaaggaaatgggccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gacacagggtagcggtgggcagtgcgaggcatcagtaagaaggacaaggaaatgggccag 281

                                                                       
Query: 241 catgccttctgtccctgccctgctctgctgcagggaggctactgtcctggtgggaatttc 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 280 catgccttctgtccctgccctgctctgctgcagggaggccactgtcctgatgggaatttc 221

                               
Query: 301 atcccctccttttgagatag 320
           ||||||||||||||||||||
Sbjct: 220 atcccctccttttgagatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)