Query= MSMg01no059_d06.b1 MSMg01no059_d06.b1 CHROMAT_FILE:
MSMg01no059_d06.b1 PHD_FILE: MSMg01no059_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:39 2005
(505 letters)
>mm_chr19_23292722_23293628
Length = 907
Score = 944 bits (488), Expect = 0.0
Identities = 502/508 (98%), Gaps = 4/508 (0%)
Strand = Plus / Plus
Query: 1 gtcagcactcaggttgcatacttgcctagctttcttcataagttccttgcacttctgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcagcactcaggttgcatacttgcctagctttcttcataagttccttgcacttctgtaa 260
Query: 61 caatctctgtctgttgtcatccaattcaatgaattgttgctattaaaaaaaataatattt 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 caatctctgtctgttgtcatccaattcaatgaattgttgctatt-aaaaaaataatattt 319
Query: 121 caaaatgttactactaaatcagaggcttgttgtataaaacaatcacatatccaataaatt 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caaaatgttactactaaattagaggcttgttgtataaaacaatcacatatccaataaatt 379
Query: 181 gctgaactcattatgatt---atgtcacctgaaccatgactttcttactataaaaataca 237
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gctgaactcattatgattatcatgtcacctgaaccatgactttcttactataaaaataca 439
Query: 238 ttagccttttattatgaatgtaaaaatttaaactaaactttaaaatatcagagccagtat 297
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttagccttttattatgaaggtaaaaatttaaactaaactttaaaatatcagagccagtat 499
Query: 298 ttctttaatatgtaagaactctaaagtttactcttttgtaaatgtttaattttaatgaaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttctttaatatgtaagaactctaaagtttactcttttgtaaatgtttaattttaatgaaa 559
Query: 358 cattatcatacacaggcttcacataagaaaacatagcatctgaatataaatttaaaaagt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cattatcatacacaggcttcacataagaaaacatagcatctgaatataaatttaaaaagt 619
Query: 418 actcctaataacttttcaaatatgttttatctatttatcattcattcatggacttattta 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 actcctaataacttttcaaatatgttttatctatttatcattcattcatggacttattta 679
Query: 478 tttccccagcagttaattagcaagatct 505
||||||||||||||||||||||||||||
Sbjct: 680 tttccccagcagttaattagcaagatct 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 907
Length adjustment: 10
Effective length of query: 495
Effective length of database: 897
Effective search space: 444015
Effective search space used: 444015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_d06.g1 MSMg01no059_d06.g1 CHROMAT_FILE:
MSMg01no059_d06.g1 PHD_FILE: MSMg01no059_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:39 2005
(447 letters)
>mm_chr19_23400811_23401657
Length = 847
Score = 779 bits (403), Expect = 0.0
Identities = 437/449 (97%), Gaps = 3/449 (0%)
Strand = Plus / Minus
Query: 1 tagacacatgaaatgaagttctctggtgcacagtgtagagaatgttg--gattttttaaa 58
||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| |
Sbjct: 604 tagacacatgaaatgaacttctctggtgcacagtgtagagaatgttgttg-tttttttta 546
Query: 59 aataaattatttcacttgcttcaatattaaattccaaaagattctcaagatgccgttcag 118
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aataaattatttcacctgcttcaatattaaattccaaaagattctcaagatgccgttcag 486
Query: 119 atttttatctagtaaaacatttttagatctatctttttattcctgtgcatagcaatgcaa 178
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 485 atttttatctagtaaaatatttttggatctatctttttattcctgtgcatagcaatgcaa 426
Query: 179 gcaagaaaacaaattctactatactatgcccacggtacctatagatatatagcattgggt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gcaagaaaacaaattctactatactatgcccacggtacctatagatatatagcattgggt 366
Query: 239 aagggctctcaattactttaatgaccctctcactgtaaagctagggattatgtgatgagc 298
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 365 aagggctctcaattactttaatgaccctctcactgtaaagctagggatgatgtgatgaac 306
Query: 299 atttactctggtcaggtttctgtgcctagaatcattatatccttcctacaatctgtaatg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 atttactctggtcaggtttctgtgcctagaatcattatatccttcctacaatctgtaatg 246
Query: 359 taagttaaaggtcccaattttcagacagggaaatcgaagcttggcggagttaagtgtcct 418
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 taagttaaaggccccaattttcagacagggaaatcgaagcttggcggagttaagtgtcct 186
Query: 419 ttggagctacttgtagtaactggtaaagt 447
|||||||||||||||||||||||||||||
Sbjct: 185 ttggagctacttgtagtaactggtaaagt 157
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
