BAC Information

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BAC

Clone NameMSMg01-059E04
Chromosome19 (Build37)
Map Location 9,382,727 - 9,383,298
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2
Downstream geneLOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059E04.T7 (MSMg01no059_e04.b1)MSMg01-059E04.TJ (MSMg01no059_e04.g1)
ACCAG285981AG285982
length695699
length of high quality
(start - end)
587 (51 - 637)560 (78 - 637)
definitionCHROMAT_FILE: MSMg01no059_e04.b1 PHD_FILE: MSMg01no059_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:43 2005CHROMAT_FILE: MSMg01no059_e04.g1 PHD_FILE: MSMg01no059_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:43 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAGCC
GCGGAATTCAATAATTTTTCTTAACCTGGTAATATCCTGGCACATTTATT
TTCATGTAACTAACATATTTCCATTCTTCACAACTGAATAAAGCTCTAGT
GTGTTTTTGTGTGTGTTTGTGCATGTGTGTGTGATATTTTCTTTGTCTAG
TCATCTTTTGCTAGACATCTAAGCTGATCCTAAAGTATGGCTATTTTTGG
CTAATGCTGTAATAACTATGGGTATGTTTGTCATCTGTTACATTCTATTG
TATACCCTAGTGATCTAGATGAATTTTGTACCAATAGTTTTTTGTACTTG
AGGGACTGCCATACTACTGTTTGTAGTTTCAAAACTGGAAAATAGGTAAT
GTGTAAAGCTTATTTACATGCTGTAACTGCTATTGTGATAAAACCTCAGC
AGAGTTTTATCTATACTCACTTTACCATGAATAAAAGAAAACTCAGTGAG
ACATGATAGTTGATCTAGAATAAGACATGAGCAAGTGCTACCCTACCAGG
ATTTGAAGTCATATATCCATGAGCTACACAGCCACTCACCATTCCCCTGT
ATTCCTTCCTTCCTCCAAAAAACAAAAAAAGCTTTAATAATTGGCAGTAC
TTTTCAATTCATAACAATTGATACCCTACACTTTTAACGAGGAAG
NNNCTCGATGAAGTCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCTCTTCTCAGTGGTGAAC
AAGCTCTGTAAAAGCTGTTGACAGTCATCCCAAGTAGGCTGATGGGAGAA
CATCAAGGACTCTATCAAGCCTGTAAGCCCTGCAGGGTTTTCTGAAAAGT
GAGGGTGATTAATCTTCCAGTTATAAAGATCAGAGGAAGAAAAGGGCCAA
TAATGTAAAAGTTGTAAGTCATTCTGATCGGCTGGAGGTGGCCCAACAGC
CCTAAGGGGAAGTGCTACAGTGGAGTCGGCCGGTCCTTCAGGGGTGGCTC
CCCATCAGCTCCTCGTCCCTGTTGAGGGACCTCCTCTTCCTCCGGTCCCA
GGGACCAGGGCCAGAAGAGGGGACAGAGGAGCAGAGGGTTGGGATACAGG
TTGGGGAGCTCGAGGATAAGGTGAGGGCAGGGGAATAGGCCACTCAGGGG
GTTCTTCTATTTCAGGGTAGATCTTAGAGGTGGGTGCCGGTGGAGTGCTG
TGCTCGCCATCTTCTTTAGACTGTGGCTTCGGCTTCTCTTCGCAGCACTC
TCTTGGACAGGCAGGATCCTGGAGCCAGGACAACGGGGTGTGAGGAATGG
TCAGACCCACTGGGGTGGGGATTGTGCTACATCCTTCCATACTGTGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_e04.b1 MSMg01no059_e04.b1 CHROMAT_FILE:
MSMg01no059_e04.b1 PHD_FILE: MSMg01no059_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:43 2005
         (587 letters)



>mm_chr19_9382524_9383510
          Length = 987

 Score = 1027 bits (531), Expect = 0.0
 Identities = 566/585 (96%), Gaps = 14/585 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcaataatttttc-ttaacctggtaatatcctggcacatttattttcatgtaacta 62
           |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaacaa-ttttctttaacctggtaatatcctggcacatttattttcatgtaacta 262

                                                                       
Query: 63  acatatttccattcttcacaactgaataaagctctagtgtgtttttgtgtgtgtttgtgc 122
           ||||||||||||||||||||||||||||||||||||||||||||            ||||
Sbjct: 263 acatatttccattcttcacaactgaataaagctctagtgtgttt------------gtgc 310

                                                                       
Query: 123 atgtgtgtgtgatattttctttgtctagtcatcttttgctagacatctaagctgatccta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atgtgtgtgtgatattttctttgtctagtcatcttttgctagacatctaagctgatccta 370

                                                                       
Query: 183 aagtatggctatttttggctaatgctgtaataactatgggtatgtttgtcatctgttaca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aagtatggctatttttggctaatgctgtaataactatgggtatgtttgtcatctgttaca 430

                                                                       
Query: 243 ttctattgtataccctagtgatctagatgaattttgtaccaatagttttttgtacttgag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttctattgtataccctagtgatctagatgaattttgtaccaatagttttttgtacttgag 490

                                                                       
Query: 303 ggactgccatactactgtttgtagtttcaaaactggaaaataggtaatgtgtaaagctta 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ggactgccatactactgtttgtagtttcaaaactggaaaataggtaatgtgtaaagctta 550

                                                                       
Query: 363 tttacatgctgtaactgctattgtgataaaacctcagcagagttttatctatactcactt 422
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 551 tttacatgctgtaactgctattgtgataaaacctcagcagggttttatctatactcactt 610

                                                                       
Query: 423 taccatgaataaaagaaaactcagtgagacatgatagttgatctagaataagacatgagc 482
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 taccatgaataaaaggaaactcagtgagacatgatagttgatctagaataagacatgagc 670

                                                                       
Query: 483 aagtgctaccctaccaggatttgaagtcatatatccatgagctacacagccactcaccat 542
           |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 671 aagtgctaccctaccaggatttgaagtcatatttccatgagctacacagtcactcaccat 730

                                                        
Query: 543 tcccctgtattccttccttcctccaaaaaacaaaaaaagctttaa 587
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tcccctgtattccttccttcctccaaaaaacaaaaaaagctttaa 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)