BAC Information

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BAC

Clone NameMSMg01-060D13
Chromosome19 (Build37)
Map Location 40,785,160 - 40,785,441
singlet/doubletsinglet
Overlap geneEntpd1
Upstream gene9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, EG667720
Downstream geneEG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060D13.T7 (MSMg01no060_d13.b1)MSMg01-060D13.TJ (MSMg01no060_d13.g1)
ACCAG286715AG286716
length731705
length of high quality
(start - end)
283 (58 - 340)197 (156 - 352)
definitionCHROMAT_FILE: MSMg01no060_d13.b1 PHD_FILE: MSMg01no060_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:54 2005CHROMAT_FILE: MSMg01no060_d13.g1 PHD_FILE: MSMg01no060_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTATACGACTCACTAATGCGAGAGAATCCGCGGAATTCAGAACTC
TCTCGGATTAAGGTGACTGTCAGTTAAGGTGATTGTCAGTTTTCCATATG
AGGGCGTTAGGACACAAAAGTTATATCAAGCCGGAAAGTGTTATTCGGGG
GTGGGATCTGATGTGTGATGTTTTTAGCAAATTAAATGCTTTGTGTATAT
TTTAAAAATGCAGAGGTCTATCTGTCTTTTGCTAGTTGTTTCTTGTCTTT
TGATTGACACATCTGATCTATTAGCTAAGACACCCATGTGATTCTCCTCC
TCATACTGATCATGTAAGTGCTTTGCCCATTGTTCTTTGTACACCGCTAA
CTTGACTTTGGTCTTCATGATACAGACAAACCTTTTTAATTCTTATATTA
TCTCCCCCACCTTTCAAGTATCTTGTGGATATAGATAGGCTCCTTATTAT
CATCTCTGGTGTTTCTAGGCAGTCATCATAATACCAGATCAATATGTAAG
AAAAATCATTGTTTGCTGATTTCTTATACATGTTCTGCTCTCGACTTTAT
ATTCTTAATCGATGAGATTTTGTTTCCAAAACATCCTGATCATCCTTTGA
CTTATCTCTATCCTGATTGTTAATACTCCCGATTGTGTGCTCCATCGTTT
CCCATCTTTTTTTGACATAAAAATGTTAAACCATCCTCACTCTACTTTCC
TTTTTCCTTCCCCCCCCAACCTGCTTATTCT
CCGACCCGNANACACCATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGGCAATCTCTTTTGTAAT
CTTAAAAAAGAAAAAAAAAAGTAACCTTGGCCAGTCTGTGGCCATTGCAC
AAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGA
GGCAGAGGCAGAGGCAGAGGAGGCAGAGGAGGCAGAGGAGGCAGAGGAGG
CAGAGGAGGCAGAGGAGGCAGAGGAGGCAGAGGAGGCAGAGGAGGCAGAG
GAGGCAGAGGAGGCAGAGGAGGCAGAGGAGGCAGAGGAGGTTGAGGAGGC
AGAGGAGGCAGAGGAGGCAGAGGAGGCAGAGGAGGCAGAGGAGGCAGAGG
AGGCAGAGGAGGCAGAGGAGGCAGAGGAGGCCGAGGAGGCCCCCCAGGCA
GAGGCAGAGGCAGAGGCCGAGGCAGAGGCAGAGGCAGAGGCAGAGGCCGA
GGCAGAGGCAGAGGCCAGAGGCAGAGGCCGGCAAATCTTTTGAGCTTGAG
GCCAGTCCGGTCTACAGAGCAAATTCCAGGACCGCCAGAGCTACCCAGAA
AAACCCTGTCTCACAACCCAAACTCCACACACACCCAACACCAAACCTAA
AAACGCCCAGCAACCTTTCTCACTGCGCGCCAGAACTCCCCATGTGATGC
ACTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_d13.b1 MSMg01no060_d13.b1 CHROMAT_FILE:
MSMg01no060_d13.b1 PHD_FILE: MSMg01no060_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:54 2005
         (283 letters)



>mm_chr19_40784960_40785642
          Length = 683

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaggtgactgtcagttaaggtgattgtcagttttccatatgagggcgttaggacacaa 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaggtgactgtcggttaaggtgattgtcagttttccatatgagggcgttaggacacaa 260

                                                                       
Query: 61  aagttatatcaagccggaaagtgttattcgggggtgggatctgatgtgtgatgtttttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagttatatcaagccggaaagtgttattcgggggtgggatctgatgtgtgatgtttttag 320

                                                                       
Query: 121 caaattaaatgctttgtgtatattttaaaaatgcagaggtctatctgtcttttgctagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaattaaatgctttgtgtatattttaaaaatgcagaggtctatctgtcttttgctagtt 380

                                                                       
Query: 181 gtttcttgtcttttgattgacacatctgatctattagctaagacacccatgtgattctcc 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttcttgtcttttgattggcacatctgatctattagctaagacacccatgtgattctcc 440

                                                     
Query: 241 tcctcatactgatcatgtaagtgctttgcccattgttctttg 282
           ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 tcctcatactgctcatgtaagtgctttgcccattgttctttg 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)