BAC Information

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BAC

Clone NameMSMg01-060G21
Chromosome19 (Build37)
Map Location 49,212,318 - 49,370,802
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC670576, Sorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060G21.T7 (MSMg01no060_g21.b1)MSMg01-060G21.TJ (MSMg01no060_g21.g1)
ACCAG286875AG286876
length699730
length of high quality
(start - end)
631 (48 - 678)356 (79 - 434)
definitionCHROMAT_FILE: MSMg01no060_g21.b1 PHD_FILE: MSMg01no060_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:09 2005CHROMAT_FILE: MSMg01no060_g21.g1 PHD_FILE: MSMg01no060_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,370,388 - 49,370,802)(49,212,318 - 49,212,652)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCCCTACTGCAGTACTCTAGACTGCTGTCTTCTATACCTGTTA
AACTTAGCTTGTAACTTGTTCTGTCAGCTAGGAGAACCCTCCATTCCTCT
CCCTGGCTTTGGAAAACTGTGAGGAGATAGTTTATGGATTCCATTTTTGA
CCTGGGACTGTCACATATTTATTGCCACTAAAAGCAAGACTCATACTTGG
ATTTAAAATCCTTAAGAGACAGACCATGCTGCAACCAAATATGAATGAGT
GACCATGGCCAAGGAACACAGATTTAAGTCACTCTAAAACCCATGTTTTA
ACATGGTAACAACTTGATAAAGTTTTTCTAGTAACACCTATTCCAGGGTA
ACATGAAATATTTTTGCCCCCCCTCTTCTAGTACTCTCACTAGAATTTGA
AGTCATTGGGGTCAAAAAGACCTCAGTGAGGACCTAGCTCTATCTCAGAC
CCATATAAGGTCTGGGTTTGCTGTTTCAGTCTCTGTGATCTTTTATGAGC
CCTGCTTAGTTGATTCTGTGGGCTATGTTCTCATGGTGTCCTCTACCCCT
CTAGCTCCTAGAATCCATTTGTTCATGATTCATACCCGAGATGACTGCCC
TTATATGACAAGAACAGTAGGAAGAAACTGCCAGGTCAATTACAGGAAA
NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGCTGCCTATTGACCACAA
AAATTGCATCAAACATCATCCAGATAGTATTGATAATATATAGATATAGG
ACGAAATATTTCCTGAACTCTAAGAGGCAGTGGAGTGGCATAGATGATTC
AGTGCAATGAGGTTTGTGGGGATAATATTGGAGAAGTAGAATTAAAGTTA
ATTGGAGTCCATAGGCTGAAAGTTTGCTTTGAATTAAGAATAACAAGTGG
AGTCTTCGTGGCAAAGGGGATAATTGGGTGGGTGGTCCTCCGATGGTGTA
TAACCATGACCATTATTTTCATTTTGTATCATGTTGTATACCTCATTCTG
TCCTCAGCTAACCCCCCCCCCTTCTATGGATAGTGTTGTTGCCTTGCCTT
GCGTGTATATATTTTAGACTATTCCTTCTTGCTGTGTTTTGTTCTTTTCT
GTTCTTATCGTATGTTTTATTACAACCGCGCTCTTGTTCCACCTACTCTA
TATTACTTGATTTTTATTTCCCCAGTCCCTTTTTAACTCACCCCCTTTGT
TGCCTTTTTGATTTTATCCATCCCCTATTCTAATCTTTACCCAACATTCA
CTTTTCTGTTAATTTACACTTTATTCTATTCTCTCCTCTACTACTCATTT
TTTTTTTTACTTTCTCTAAATTCATTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_g21.b1 MSMg01no060_g21.b1 CHROMAT_FILE:
MSMg01no060_g21.b1 PHD_FILE: MSMg01no060_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:09 2005
         (631 letters)



>mm_chr19_49370388_49371418
          Length = 1031

 Score =  772 bits (399), Expect = 0.0
 Identities = 411/415 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccctactgcagtactctagactgctgtcttctatacctgttaaacttagcttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gaattctccctactgcagtactctagactgctgtcttctatacctgttaaacttagcttg 356

                                                                       
Query: 65  taacttgttctgtcagctaggagaaccctccattcctctccctggctttggaaaactgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 taacttgttctgtcagctaggagaaccctccattcctctccctggctttggaaaactgtg 296

                                                                       
Query: 125 aggagatagtttatggattccatttttgacctgggactgtcacatatttattgccactaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aggagatagtttatggattccatttttgacctgggactgtcacatatttattgccactaa 236

                                                                       
Query: 185 aagcaagactcatacttggatttaaaatccttaagagacagaccatgctgcaaccaaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 aagcaagactcatacttggatttaaaatccttaagagacagaccatgctgcaaccaaata 176

                                                                       
Query: 245 tgaatgagtgaccatggccaaggaacacagatttaagtcactctaaaacccatgttttaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tgaatgagtgaccatggccaaggaacacagatttaagtcactctaaaacccatgttttaa 116

                                                                       
Query: 305 catggtaacaacttgataaagtttttctagtaacacctattccagggtaacatgaaatat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 catggtaacaacttgataaagtttttctagtaacacctattccagggtaacatgaaatat 56

                                                                  
Query: 365 ttttgccccccctcttctagtactctcactagaatttgaagtcattggggtcaaa 419
           ||||| ||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  ttttggccattctcttctagtactctcactagaatttgaagtcattggggtcaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no060_g21.g1 MSMg01no060_g21.g1 CHROMAT_FILE:
MSMg01no060_g21.g1 PHD_FILE: MSMg01no060_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:09 2005
         (356 letters)



>mm_chr19_49212118_49212873
          Length = 756

 Score =  640 bits (331), Expect = 0.0
 Identities = 334/335 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagctgcctattgaccacaaaaattgcatcaaacatcatccagatagtattgataata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagctgcctattgaccacaaaaattgcatcaaacatcatccagatagtattgataata 260

                                                                       
Query: 61  tatagatataggacgaaatatttcctgaactctaagaggcagtggagtggcatagatgat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tatagatataggacgaaatatttcctgaactctaagaggcagtggagtggcatagacgat 320

                                                                       
Query: 121 tcagtgcaatgaggtttgtggggataatattggagaagtagaattaaagttaattggagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagtgcaatgaggtttgtggggataatattggagaagtagaattaaagttaattggagt 380

                                                                       
Query: 181 ccataggctgaaagtttgctttgaattaagaataacaagtggagtcttcgtggcaaaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccataggctgaaagtttgctttgaattaagaataacaagtggagtcttcgtggcaaaggg 440

                                                                       
Query: 241 gataattgggtgggtggtcctccgatggtgtataaccatgaccattattttcattttgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gataattgggtgggtggtcctccgatggtgtataaccatgaccattattttcattttgta 500

                                              
Query: 301 tcatgttgtatacctcattctgtcctcagctaacc 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatgttgtatacctcattctgtcctcagctaacc 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)