BAC Information

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BAC

Clone NameMSMg01-060K18
Chromosome19 (Build37)
Map Location 18,250,112 - 18,250,398
singlet/doubletsinglet
Overlap genenone
Upstream geneA230083H22Rik, Gcnt1, Rfk, Pcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060K18.T7 (MSMg01no060_k18.b1)MSMg01-060K18.TJ (MSMg01no060_k18.g1)
ACCAG287061AG287062
length698749
length of high quality
(start - end)
290 (74 - 363)---
definitionCHROMAT_FILE: MSMg01no060_k18.b1 PHD_FILE: MSMg01no060_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:27 2005CHROMAT_FILE: MSMg01no060_k18.g1 PHD_FILE: MSMg01no060_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCTTGTTCATAGACTTCCATCCAGAGAGAGCAGGTTTCCT
TCAATCCTTCCCCCAAGTTACCATGAGATCTTTCTGCCATATTTTCTTGG
GACACTCACGCTGTCTTATGTCTCATTCCTTGCCCTTTAATGAGCTTAGC
CACAGCTACGTTCTAGGGGTCTTTGACTAGAGGATTTGGCACCTCACTGT
TTTTACCATGTGATGTGGTGATCCTACTTTCTAGGTGATACTTCAGGATT
TTGATCAGCATTTTCCATAGTTTTTACTCATACACATAATCAGTGACTGC
TAATATATAGTCTATCTCAAAGTTCACTAAGATAAAAGGGACAAATGATC
TTATTACTGAAAGGTATAGGCATTTGTTTACTTGAAGAGAGTCTATGTTG
AAGACCAACATCATTGTTAACAAAAATGCTCGTCATTTTTCATTCTTCTT
CCCAATATGCTTTAGGAAATTCCCTGAAGCACAGTTACCATGGGGGTCAT
GAAAAGTTACCCCCTTGCCTGGCCCATCTAGATTACCTGACCTACTTCTC
TTATAACCTCGTATAGGCCTAGAACTTGGATTATGGGGACTGCCGTTTCT
ACCCCTCCTAACCTTCCTTTTGCCCCGCCTGTCCCTTTTTTCCACCTG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCGCCTGAGGAATACCGAATGACTGACAAAC
ACCTGAAAAAATGTTCGCATCCTTAATCTTCATAGAAATGTTAATCAAAA
CAACACTGAGATTCAACCTCACACCAGGCAGAATGGCTGATATCAAAAAT
TCCGGTGACAGCAGATGCTGGACAACATGTGCACAAAGAGGAATACTTCT
CCACCGTTGGTGGCACTGCAAGCTTGTACAAACACTCTGGAAATCAGTCT
GGCGTTTCCTCAGAAAACTGTATACAGTACTACCGGAGGATTCCCCTATA
CCTCTCCTGGGCATATATCCTGAAGACGATCCAACGGCTTAGAACGACAC
ACGCCTTCCTTATGCCCATAGCAGCCTTATTTACTCTAGTCCCAATTCGC
CCAGAATTCCGATGCTCGTCCCCATAGTAATGGATACGGGTGTTGTCATA
TATTTACAACCCGCCCTATTACTCATTTTATTAAAACCACTCCTTTTCTC
CCTCTCCGGTGACCCCAGTAAGAAACCCGAACCCCCTCGGGCCTGCTTTG
ATTTCACACAACACACCCAGGGAACCACCCACCGGTGGGGGGCACCCACA
ATTAAACGGTATCTTAATCCCCCCCAAGTTGGGGTACCCCACACAAGGGG
CTAATACCACCTCAACCCCTCACCCCCCTCGGGGGCCTCCAACCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_k18.b1 MSMg01no060_k18.b1 CHROMAT_FILE:
MSMg01no060_k18.b1 PHD_FILE: MSMg01no060_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:27 2005
         (290 letters)



>mm_chr19_18249912_18250601
          Length = 690

 Score =  493 bits (255), Expect = e-144
 Identities = 279/287 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttccatccagagagagcaggtttccttcaatccttcccccaagttaccatgagatcttt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 487 cttccatccagagagagcaggtttccttcaacccttcccccaagttaccatgagatcttt 428

                                                                       
Query: 61  ctgccatattttcttgggacactcacgctgtcttatgtctcattccttgccctttaatga 120
           |||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 427 ctgctatattttcttgggacactcacactgtcttatgtctccttccttgccctttaatga 368

                                                                       
Query: 121 gcttagccacagctacgttctaggggtctttgactagaggatttggcacctcactgtttt 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gctcagccacagctacgttctaggggtctttgactagaggatttggcacctcactgtttt 308

                                                                       
Query: 181 taccatgtgatgtggtgatcctactttctaggtgatacttcaggattttgatcagcattt 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 307 tacaatgtgatgtggtgatcctactttctaggtgatacttcaggattttgatcagtattt 248

                                                          
Query: 241 tccatagtttttactcatacacataatcagtgactgctaatatatag 287
           ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 247 tccatagtttttactcaaacacataatcagtgactgctaatatatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)