Query= MSMg01no061_a06.b1 MSMg01no061_a06.b1 CHROMAT_FILE:
MSMg01no061_a06.b1 PHD_FILE: MSMg01no061_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:53 2005
(407 letters)
>mm_chr19_10382836_10383643
Length = 808
Score = 723 bits (374), Expect = 0.0
Identities = 398/406 (98%), Gaps = 3/406 (0%)
Strand = Plus / Plus
Query: 4 ggaattc-aaacacacacggtttaaaagcataaagtgtcatctgtccctggctgggggct 62
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaaacacacagggtttaaaagcataaagtgtcatctgtccctggctgggggct 263
Query: 63 gggggaataccacagctagttcttcacttggatgtaagatattaaattactgggtgaaat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 264 gggggaataccacagctagttcttcacttggatgtaagatattaaattactggatgaaat 323
Query: 123 cacaggtctgggcatggtgactttgtggtacccagccctgaatccttgtagctcgtgtga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacaggtctgggcatggtgactttgtggtacccagccctgaatccttgtagctcgtgtga 383
Query: 183 gaactttgaccacccccagggctcaggtcttccacccctgaataccacaaagtgccagct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 384 gaactttgaccacccccagggctcaggtcttccacccctgaataccacaaagtgccaac- 442
Query: 243 ct-ccctgtatcctggtacctcagatgggggtaggtgggaagaaactgcttagttgtcac 301
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cttccctgtatcctggtacctcagatgggggtaggtgggaagaaactgcttagttgtcac 502
Query: 302 caggtaaataagtctgctgctggtatcccaagaggggaatgttgtttatccaaatagtac 361
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 503 caggtaaataagtctgctgctggtaccccaagaggggaatgttgtttatccaaatagtac 562
Query: 362 aaactctaccaccctggggagaagagagcaaagctctggaggctga 407
||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 563 aaactctaccagcctggggagaagagagcaaagctctggaggctga 608
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 808
Length adjustment: 9
Effective length of query: 398
Effective length of database: 799
Effective search space: 318002
Effective search space used: 318002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_a06.g1 MSMg01no061_a06.g1 CHROMAT_FILE:
MSMg01no061_a06.g1 PHD_FILE: MSMg01no061_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:53 2005
(543 letters)
>mm_chr19_10540675_10541617
Length = 943
Score = 1017 bits (526), Expect = 0.0
Identities = 535/538 (99%)
Strand = Plus / Minus
Query: 1 tccatcataagaagaggcttcagaagcgatgaggccctgaagaattcaagtacgatttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tccatcataagaagaggcttcagaagcgatgaggccctgaagaattcaagtacgatttac 479
Query: 61 atgtgggatgccatcactaacaaagggatgggcattgtgatgccttctgtgggcctggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atgtgggatgccatcactaacaaagggatgggcattgtgatgccttctgtgggcctggag 419
Query: 121 cagcacccagctgctggtgtggggctggaaggatcttctgggagacacaaaagctatgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cagcacccagctgctggtgtggggctggaaggatcttctgggagacacaaaagctatgca 359
Query: 181 cagagtgactcacctgactctaggctcctgcacagacaggcatagtaaggtgagtgcaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cagagtgactcacctgactctaggctcctgcacagacaggcatagtaaggtgagtgcaac 299
Query: 241 ttcaaaggatcctcagtggctgaaagctgcatccttccccgggctcaatggtgtggatct 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttcaaaggatcctcagaggctgaaagctgcatccttccccgggctcaatggtgtggatct 239
Query: 301 acagataacatagtaagaccccatttgttgtttaattaaacctgacatggtggtacatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 acagataacatagtaagaccccatttgttgtttaattaaacctgacatggtggtacatat 179
Query: 361 ctgtaatctgaacgtttgaaaggagcgaggagaattaggagttcaaggctagcctgggct 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ctgtaatctgaacatttgaaaggagcgaggagaattaggagttcaaggctagcctgggct 119
Query: 421 acaccagaccttgtttcagaacaaagcaaaccaaacaaaagtgcattttggggaccagag 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 118 acaccagaccttgtttcagaacaaagcaaaccaaacaaaagtgcatcttggggaccagag 59
Query: 481 actatagctcagtggtagaaaatgctcatgcatcaggcactatgtttagcctccaaca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 actatagctcagtggtagaaaatgctcatgcatcaggcactatgtttagcctccaaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
