BAC Information

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BAC

Clone NameMSMg01-061G06
Chromosome19 (Build37)
Map Location 36,651,818 - 36,652,470
singlet/doubletsinglet
Overlap geneHectd2
Upstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201
Downstream geneLOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061G06.T7 (MSMg01no061_g06.b1)MSMg01-061G06.TJ (MSMg01no061_g06.g1)
ACCAG287611AG287612
length717723
length of high quality
(start - end)
611 (39 - 649)655 (69 - 723)
definitionCHROMAT_FILE: MSMg01no061_g06.b1 PHD_FILE: MSMg01no061_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:21 2005CHROMAT_FILE: MSMg01no061_g06.g1 PHD_FILE: MSMg01no061_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TCGTTTCCCCCTTTCTTCCTTACAGCCCCTGCCAGGTACCCTCCCTCCAA
ACCCTTCCATGCCCTTTCCACTCTTAACTCTTTTCTTTGATTATTGTTTC
GTACATATGCATGCATATGTATATGCAAATAAATAAATACAACCTGCTGA
ATTTGCTTTTGTTATTTGTGTGTATGTGTTTTCAAGGATGACCACTGTTT
TGGACAACCAGTAAGGAGGCTCATTTGTCTCTGGGGGAGGCTAACTCTCC
CAGCCATCGTTCCTTGCTGGAGTTCTTTGTCTAGTGGTGGGAACCCATTG
AAATATTCCTCCTCCCACTTTGATATGTCCAATGATACTCATATTTTTCT
AGTCATTTCTGGCAGAGGCTGTTTCACAGTAGACTTCCTGGTGTTCTAGC
TTTTCAGTGTCCTTCCAGATCACTTCTCTCATGTTCCCCAAGCCACATCT
ACAGGAGTTGGCATAGCTATGTATCCCCATAATCCACTGCTCTGTGCATT
GTGTCCATTTGTAGCTTTCTGTGATGGGTTTCATTTGCTGTAAAGCCCAG
CTTTTTGTGAGGGCTGGTAGCTACAGTTATCTATGGGTATAAGGATAAGA
GAATGTAGTAAGGAATTACACTGGACTAGTAAATCGGTTGTAGTTGATTC
TTTTTCAGTGACCATGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGAAGGAGATGAAATCTGGACATGGCTATTT
AAATAGTGAAGCCATAGAAACTAAAGTGAAAACTGAAGACAACCTTAGAT
CCCTAGTTGGTCTCTCTTTGTCACAGGGTCACAATGCCTCTCCATTCCTA
CTCCAGTGGAAATCCGGAAATTTACATTCTTTGGAGAGGATACAATTGGC
ACTTTGGCCTGGGAGAAACGTTATCTGAAGTGATAAGAGCATCAAAAATA
CGGGAAGAAAATGCTAATTGCTAAATTCTAAAAATGATCAAGAGGCCACT
TTCATCTCCACCTTCCTAATAAATCACTCAATTCAGCTTCACTTTATAAG
GTCTCCCACCCCCACACCACGAGAGAAGATGACAGCTTTCTTGGAGAATC
TAGCATCATTATTAAAGGAAATAATGATGTTAATTAATCAGATGTCCCTA
AACAGAAGCCTACCCACATCATCTTATGATAAAGCTTAAGGCTAATAACC
TTACCCATGCCTCAGATTTCAATTATTTTGTTCCTTAGTGCAAATGATAG
GCAGAAAACTAAATATAAATTTCTGATCGAAAGTCTCCAATGTGGAAAAG
ACAAAAACAAAGACAAATAAAACTTGACTTTAAAATCCATGAAAGGAGGC
AGGGTGGAAACCTATCTTAGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_g06.g1 MSMg01no061_g06.g1 CHROMAT_FILE:
MSMg01no061_g06.g1 PHD_FILE: MSMg01no061_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:21 2005
         (655 letters)



>mm_chr19_36651618_36652671
          Length = 1054

 Score = 1187 bits (614), Expect = 0.0
 Identities = 644/654 (98%), Gaps = 1/654 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaaggagatgaaatctggacatggctatttaaatagtgaagccatagaaactaaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 ctgaaggagatgaaatctggacatggctatttaaatagtgaagccatagaaactaaagtg 794

                                                                       
Query: 61  aaaactgaagacaaccttagatccctagttggtctctctttgtcacagggtcacaatgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 aaaactgaagacaaccttagatccctagttggtctctctttgtcacagggtcacaatgcc 734

                                                                       
Query: 121 tctccattcctactccagtggaaatccggaaatttacattctttggagaggatacaattg 180
           ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 733 tctccattcctactccagtggaaatccagaaatttacattctttggagagaatacaattg 674

                                                                       
Query: 181 gcactttggcctgggagaaacgttatctgaagtgataagagcatcaaaaatacgggaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gcactttggcctgggagaaacgttatctgaagtgataagagcatcaaaaatacgggaaga 614

                                                                       
Query: 241 aaatgctaattgctaaattctaaaaatgatcaagaggccactttcatctccaccttccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aaatgctaattgctaaattctaaaaatgatcaagaggccactttcatctccaccttccta 554

                                                                       
Query: 301 ataaatcactcaattcagcttcactttataaggtctcccacccccacaccacgagagaag 360
           |||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct: 553 ataaatcactcaattcagcttcacttcataaggcctcccacccc-acaccacgagagaag 495

                                                                       
Query: 361 atgacagctttcttggagaatctagcatcattattaaaggaaataatgatgttaattaat 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 494 atgacagctttcttggagaatctagcatcattattaaaagaaataatgatgttaattaat 435

                                                                       
Query: 421 cagatgtccctaaacagaagcctacccacatcatcttatgataaagcttaaggctaataa 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cagacgtccctaaacagaagcctacccacatcatcttatgataaagcttaaggctaataa 375

                                                                       
Query: 481 ccttacccatgcctcagatttcaattattttgttccttagtgcaaatgataggcagaaaa 540
           |||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||
Sbjct: 374 ccttacccatgcctcagatttcaattattttgttccctagtgcaaatgatagatagaaaa 315

                                                                       
Query: 541 ctaaatataaatttctgatcgaaagtctccaatgtggaaaagacaaaaacaaagacaaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctaaatataaatttctgatcgaaagtctccaatgtggaaaagacaaaaacaaagacaaat 255

                                                                 
Query: 601 aaaacttgactttaaaatccatgaaaggaggcagggtggaaacctatcttagaa 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aaaacttgactttaaaatccatgaaaggaggcagggtggaaacctatcttagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1054
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1044
Effective search space:   673380
Effective search space used:   673380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)