Query= MSMg01no062_f12.b1 MSMg01no062_f12.b1 CHROMAT_FILE:
MSMg01no062_f12.b1 PHD_FILE: MSMg01no062_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:50 2005
(701 letters)
>mm_chr19_28513553_28514654
Length = 1102
Score = 1002 bits (518), Expect = 0.0
Identities = 562/588 (95%), Gaps = 19/588 (3%)
Strand = Plus / Minus
Query: 1 aagctgtgctggagagtccaatctctccatggatatgtcaaaacacccgtcagaaacaga 60
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 570 aagctgtgctggagagtccaatctctccatgggtatgtcaaaacaaaagtcagaaacaga 511
Query: 61 tgagcccaccttcccccaaatatccaaagcttcaagaaagtcacagcaaatgaaaatgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tgagcccaccttcccccaaatatccaaagcttcaagaaagtcacagcaaatgaaaatgag 451
Query: 121 gcaagagaacgtggctgactagagaaaagccattaactaaatcaattaagaaataaatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gcaagagaacgtggctgactagagaaaagccattaactaaatcaattaagaaataaatac 391
Query: 181 catccggggagaatttctccctagtctgtaagatcagtgggcctagccatgccacagact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 catccggggagaatttctccctagtctgtaagatcagtgggcctagccatgccacagact 331
Query: 241 cactaggcaagcaggatgttggggcttggggg-tctctccatttttggacgaatttttgt 299
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 330 cactaggcaagcagaatgttggggcttggggggtctctccatttttggacgaatttttgt 271
Query: 300 ctaaacttttcgtaaaaggtctgcttttctgttcgtgcatcagttagggtcatgggacgg 359
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 270 ctaaacttttcgtaaaaggtctgcttttctgttcatgcatcagttagggtcatgg----- 216
Query: 360 catgtttccatggcacggcatgtttccaaaggcctttcccgtgagaccaaagacaccgat 419
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 -------------cacggcatgtttccaaaggcctttcccgtgagaccaaagacaccgat 169
Query: 420 atgctcactggatgccatgtttttgccaccaagataaaccacactcttggttttgctttc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 atgctcactggatgccatgtttttgccaccaagataaaccacactcttggttttgctttc 109
Query: 480 tggactattgtttcagttttcatttgttatttatctatgagcacctaggggtcagagact 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 tggactattgtttcagttttcatttgttatttatctatgagcacctaggggtcagagact 49
Query: 540 tcgtcctttttgactcctttatttgcctggggcttggctgagcactct 587
|||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 48 tcgtcctttttgactcctttatttgcctggggcttggctgagtactct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1102
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1092
Effective search space: 754572
Effective search space used: 754572
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_f12.g1 MSMg01no062_f12.g1 CHROMAT_FILE:
MSMg01no062_f12.g1 PHD_FILE: MSMg01no062_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:50 2005
(745 letters)
>mm_chr19_28401162_28402315
Length = 1154
Score = 1303 bits (674), Expect = 0.0
Identities = 729/752 (96%), Gaps = 9/752 (1%)
Strand = Plus / Plus
Query: 3 tcctgtgatggttaatcttgactgtcaccctgattaggtgaggaaccacctaagagacat 62
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct: 203 tcctgtgatggttaatcttgactgtcaacctgattaggtgaggaatcaactaagagacat 262
Query: 63 gctctcaggaagagctgtgaggacacttcccagaaggatcacctgaccttcctttagagt 122
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gctctcaggaagacctgtgaggacacttcccagaaggatcacctgaccttcctttagagt 322
Query: 123 gagtggcacctcccaccaaagcagagagtaataaaggtctgaggagaaggcagtgcattg 182
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 323 gagtggcacctcccaccaaagcagagagtaataagggaatgaggagaaggcagtgcattg 382
Query: 183 acaagtgttgcttaggaatccatctctgtggccagcacactgcagcctctttgaattcca 242
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 383 acaagtgttgcttaggaatccatcactgttgccagcacactgcagcctctttgaattcca 442
Query: 243 atgtggaatgaagaccagtggctctttagggaccttccaggtcttcaggttggaacttct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atgtggaatgaagaccagtggctctttagggaccttccaggtcttcaggttggaacttct 502
Query: 303 gaggcatccaactccaatggaaggaggaactatgggctcctcagcttctccaggatgcaa 362
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 503 gaggcatccaactccaatggaaggaggaactatggggtcctcagcttctccaggatgcaa 562
Query: 363 atgaacactggtaagatggctctttcctcaggcacccagagtacagggcacttgctgtcc 422
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atgaacactggtaagatgactctttcctcaggcacccagagtacagggcacttgctgtcc 622
Query: 423 ataatgctgtgactgggtcttgtaaacaga--ctgcaactgaatctccagcttgctgatg 480
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 623 ataatgctgtgactgggtcttgtaaacagagactgcaactgaatctccagcttgctgatg 682
Query: 481 gtctgcctcaaggtttgggaacccacagcacag-------tgtcattagtactgtgaaaa 533
||||| || |||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 683 gtctgtcttaaggtttgggaacccacagcacaggacaatgtgtcattagtattgtgaaaa 742
Query: 534 ccagccactggctgtcaactggatttgtgagcatgagcctcaagactgcatctaaaggaa 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ccagccactggctgtcaactggatttgtgagcatgagcctcaagactgcatctaaaggaa 802
Query: 594 gtgactatctctactgatttgtgatgtaaatacccaatgacatcatctcctagtttaccc 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gtgactatctctactgatttgtgatgtaaatacccaatgacatcatctcctagtttaccc 862
Query: 654 cccaaccggaaagtttccaaagattcacaagaagctaaacatgttggggagactttgagt 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 cccaaccggaaagtttccaaagattcacaagaagctaaacatgttggggagactttgagt 922
Query: 714 ggatactcaaatcccctggggcttctgagctt 745
||||||||||||||||||||||||||||||||
Sbjct: 923 ggatactcaaatcccctggggcttctgagctt 954
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 745
Length of database: 1154
Length adjustment: 10
Effective length of query: 735
Effective length of database: 1144
Effective search space: 840840
Effective search space used: 840840
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
