Query= MSMg01no062_k18.b1 MSMg01no062_k18.b1 CHROMAT_FILE:
MSMg01no062_k18.b1 PHD_FILE: MSMg01no062_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:30 2005
(702 letters)
>mm_chr19_52957330_52958431
Length = 1102
Score = 1226 bits (634), Expect = 0.0
Identities = 687/708 (97%), Gaps = 7/708 (0%)
Strand = Plus / Plus
Query: 1 aaatgtatgtgtatgtggtcacgaattatcaccagacaaagcatctaaaccccaaaaatg 60
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 201 aaatgtatgtgtatgtggtcacgaattatcacaagacaaagcatctaaacaagaaaaata 260
Query: 61 tgcttagtctgtgggcagaacttgacatcaatgtcttgggcataatgagcatctcttccc 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tgcttagtctgtgagcagaacttgacatcaatgtcttgggcataatgagcatctctcccc 320
Query: 121 atgggaaggggcctcgccatgtttctttttctgtattgttttttgagacgagattcatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgggaaggggcctcgccatgtttctttttctgtattgttttttgagacgagattcatga 380
Query: 181 agcccaggctggccatcagttgcttggtagccaaggatgaccctgatcctcttttttctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 agcccaggctggccatcagttgcttggtagccaaggatgaccctgatcctcttctttctg 440
Query: 241 cttccatgtccagaagcaggtgccaccaggcccactttctacagtgccatagagcaagtc 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttccatgtccagaagcaggcgccaccaggcccactttctacagtgccatagagcaagtc 500
Query: 301 cagggtttcaccaactgaactacatctctctgttcctagcattcaaatctgaaatgtgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagggtttcaccaactgaactacatctctctgttcctagcattcaaatctgaaatgtgtg 560
Query: 361 ccttgaagctagctcccaatgtgagtgtataacaggatacattactggcctattaagagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttgaagctagctcccaatgtgagtgtataacaggatacattactggcctattaagagt 620
Query: 421 cagtaaaattgtagtaaattctacaagtttaaaataaaaaaatatgcttgagggctggaa 480
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 cagtgaaattgtagtaaattctacaagtttaaaataaaaaa-tatgcttgagggctggaa 679
Query: 481 agatggcttagcaattaagaggacttaatgttcctgcagagaacctaagtccatttcctg 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 680 agatggcttagcaattaagaggacttaatgttcctgcagagaacctaagtccattttctg 739
Query: 541 gcaccaatagggcagctcacagctgcctgaaactccagttccagggtatctgacaccctc 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gcaccaatagggcagctcatagctgcctgaaactccagttccagggtatctgacaccctc 799
Query: 601 cctcttttgggctccataggtacctgaactcacatgtgtgtgcgccaatgcacacacaca 660
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 800 cctcttttgggctccataggtacctgaactcacatgtgtgtgtgccaatgcacacacaca 859
Query: 661 cacacacacacacacacatacacac------gtatgcacacctttcag 702
|||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 860 cacacacacacacacacacacacacacacacgtatgcacacctttcag 907
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_k18.g1 MSMg01no062_k18.g1 CHROMAT_FILE:
MSMg01no062_k18.g1 PHD_FILE: MSMg01no062_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:30 2005
(674 letters)
>mm_chr19_53093703_53094776
Length = 1074
Score = 1216 bits (629), Expect = 0.0
Identities = 666/683 (97%), Gaps = 9/683 (1%)
Strand = Plus / Minus
Query: 1 tgtgtactttccaaaatacaaatacacccaccctgttccctagtggagacgaaccagacg 60
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 700 tgtgtactttccaaaatacaaatacacccacactgttccctagtggagatgaaccagacg 641
Query: 61 agccccaagtgcagggttatgcaaggacctggcacttgagtggtcagcctctccggttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 640 agccccaagtgcagggttatgcaaggacctggcacttgagtggtcagcctctctggttct 581
Query: 121 ctctaatcccagaacaaggccccaggagcctttacagtggtgatcggtaaatgctttcct 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 580 ctctaatcccagaacaaggccccaggagcctttacagaggtgatcggtaaatgctttcct 521
Query: 181 gtgctgtctcaggcagataccgggatccctgggcatccgcagcttcaagccaggacagcc 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gtgctgtctcaggcagattccgggatccctgggcatccgcagcttcaagccaggacagcc 461
Query: 241 actggatggggccagggctttctttcagaaatcctatctttcttcttatctgaaaggccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 actggatggggccagggctttctttcagaaatcctatctttcttcttatctgaaaggccc 401
Query: 301 tgttctttggcttggcctagacaaagggtcacattctgtcgaagcgaatttgttaatatg 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tgttctttgacttggcctagacaaagggtcacattctgtcgaagcgaatttgttaatatg 341
Query: 361 aggctttggcggggtatgtggttctctttctggaagtcacgaatcagattttcctaaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aggctttggcggggtatgtggttctctttctggaagtcacgaatcagattttcctaaact 281
Query: 421 gtatttttttctcctgaaaaatcatacctcctcaaatcggcctcctgttttgattcttaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 280 gtatttttttctcctgaaaaatcatacctcctcaaatcggcctcctgttttgtttcttaa 221
Query: 481 accttattttttaaaagctattttatttttttaaagatttatttatttattttatgtgtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 accttattttttaaaagctattttatttttttaaagatttatttatttattttatgtgtg 161
Query: 541 tgagtgcactatagctgtacagatggttgtgagccttcgtgtggttgctgagatttgaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 tgagtgcactatagctgtacagatggttgtgagccttcgtgtggttgctgagatttgaac 101
Query: 601 tcaggacctacagaagagcagt-----ctcttacctgctgagccatcttgctagcccttg 655
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 100 tcaggacctacagaagagcagtcagtactcttacctgctgagccatcttgccagcccttg 41
Query: 656 ----ttaaatttaatcctggggc 674
|||||||||||||||||||
Sbjct: 40 tttcttaaatttaatcctggggc 18
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
