BAC Information

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BAC

Clone NameMSMg01-062K19
Chromosome19 (Build37)
Map Location 26,616,439 - 26,617,159
singlet/doubletsinglet
Overlap genenone
Upstream geneDmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik, LOC100041846, LOC100041857
Downstream geneSmarca2, Gm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062K19.T7 (MSMg01no062_k19.b1)MSMg01-062K19.TJ (MSMg01no062_k19.g1)
ACCAG288593AG288594
length1,1331,188
length of high quality
(start - end)		633 (123 - 755)719 (86 - 804)
definitionCHROMAT_FILE: MSMg01no062_k19.b1 PHD_FILE: MSMg01no062_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:30 2005CHROMAT_FILE: MSMg01no062_k19.g1 PHD_FILE: MSMg01no062_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCTTTTTTTNNAACATTGGGCGCATAGACTCCTAAGGGAGAGGATCC
GCGGAATTCTATAGTCTTNTGGGGCCTTATTAATATTTCTTCCCTAACAA
TGTTATTGAGCAAAGCTTTAATCAGTTTCCATGACTATGCCAGCCTTTCT
ATTGGTTTTACTGTTATTGAAGTCCAGCCTTAGTCTGTGGTGATCTGATA
GAATTCGTGGGATTATTTCAATCTTATTTTGTCTGTTGAGTCTTGTTTTG
TGTCCAGTTATATGGTCAGTTTTGTAGAAGGCTCCATGAGGTGCTGAGAA
AAAGGTAGATTCTCTTGCATTGGGGTGAAATTTCTGTATATATGTGTTAA
ATTCATTTGGTTCATAACTCTGTTAGTTTCACTGTGTCTCCATTTAGTTT
CTGTTTCCATGATCTGTCCATTGGTGGGAGGGGTTGATGAAGTCTCCCAA
TATTGATGTGTGAGGTTCAATGGGTGTTATGAGCTTAAGTAAATTTTCTT
TTATGAATGTGGGTGCCCTTGCATTTAGGGCATAGATGTTTAGAATTGAG
ACTTCCTCCTGGTGGATTTTTCTTTGATGAATATGAAGTGTCCTTCCTCA
TCTTGTCTGATAACTTCTGGTTGAAAGTCTATTTTATTGTATAATAGCAA
CTCTAACTTGTTTCTTGGGACCATTTGCTTGGAAAACTTTTTTCTAGCCC
TTTACTCTGAGGTCATATCTATCTTTGTCACTGAGGCGTGTTTCTTGTAT
GCAACAAAGTGATGGTCCTATCTAGTCTGTTAGCTTGTATCTTTTTATTG
NCAAATTGGTCCATTGATGTTGATAGATATTATACACGCTGAATTTTTAT
TTTCTGCTATTTTTTGCTGGTTAGGTTGGTTTTATTGGTTCGCCGTTTCC
TTCTTCTGGCATTGTTGTTACCTTTTTATTCTTTTCCAGTTTTCTTTTTT
TTATTTTTTCCCTCCTTTTTTATTTTTTTTTTCTCTTTTCAAATTTTTTC
TTTTTTCTTTTTTTTAATCTTTTCTTTCTTTTTTCTTTTTCTTTTTTTAC
TTCTGTTTCTTTTTACTCCTCTCTTTCTTTCTTTTTATTTTTCTTTTTTT
TATTCCTTTTTTTTTTTTTTACTTCCTCTTCTC

NCCCTTCTTTTTTTTTCAGATGTGAGCCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACTTTTTACTTTGGCATCTCAGAG
GCCTCCCCGCTTTTCTCCTCAAGTCACATTCTGAGCCGCCCTAGAAGGTC
ATCAGAAAGCCCCTTAACTGAAGAGGAGAGAACGGATATTCCAGTGTTTG
TGCTGTTGATGAGCAAATTAAATGACTAGAATTACAGGTAGCTAACTTGA
TGATATTTACATTGCTTCCATAAAACAGTTGAATATTTGAGCAAATTTAC
AGTTTGACTTTCAATTTGTATACCATTGATGGAGAGGTGTGTTGCTAGAT
GATTATGCACTGAGATACACTTGTAGACCCTAGAAGGGCATGGGCCATAG
TCTCTGCAGAAATATACCTATAACACTGGAAAACATGTCGCTACCATTTA
TGGATTACATTAGGATGACCTGTTTTATAGCAAAATTTGATATCTTTAGA
ATTATTCTTAAAAATCTTACTGGTTGAACCTGATTTTTTTTTTTTAGAAA
GCAATTGTTTTTTGCAAAGTTGATTTCATAACAACTCAAAAAGATTTCTT
AGTTAATATGTTAATTTGTAAATCTTTTTACTATAATAAAAGGGCTTAGA
GGTAGATGTTATAGATTTCCCATGTAAGACAAACAAACAAGGCAAATTTC
AAAGGAAAGTCAAAGAACAAGCCTCAGCATTGAAAAAATACCCTGGCAGC
TGCTCTAGACCCAACTGGTCCCCTAGTCCCAGGGACCCACCTGGAATTTT
CCAGCAGATAGGATGGGCTGGCTGGAGGAACTCTGAACAAACAGATGTAT
AAGTGTTCTTGGCTTTGGCAAGCATGGCCCTTCTTTAGGATTTCCAGTGT
ATTGTGGATGGGAGCTGATGCCCCTTAAAGGTCAGAGGCAGTATCTGAGC
TGTATGGGCTTAAAAGAGAACCCCCAAGCCAGCAGAAAAACCTGGACCCT
TGCTAACCAAAAAGTGGACTGGTTGTTAAAGGTTAAAAAACCCTTTACTG
TGCCCTCCCGTTGAACCAATGTCCCTCCTCCACGGGCGCAGTTTTCCTTC
CATAGTTGGAAACCTTTTCTTTACCTCCCAAAAATAAAATTGTTGTAAGG
GGACAAACCGTATGGTTTTCCTGTTATACTGTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_k19.g1 MSMg01no062_k19.g1 CHROMAT_FILE:
MSMg01no062_k19.g1 PHD_FILE: MSMg01no062_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:31 2005
         (719 letters)



>mm_chr19_26616239_26617359
          Length = 1121

 Score = 1344 bits (695), Expect = 0.0
 Identities = 714/721 (99%), Gaps = 2/721 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggcatctcagaggcctccccgcttttctcctcaagtcacattctgagccgccctaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||
Sbjct: 921 tttggcatctcagaggcctccccgcttttctcctcaagtcacattctgaggtgtcctaga 862

                                                                       
Query: 61  aggtcatcagaaagccccttaactgaagaggagagaacggatattccagtgtttgtgctg 120
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 861 aggtcatcagaaagccctttaactgaagaggagagaaaggatattccagtgtttgtgctg 802

                                                                       
Query: 121 ttgatgagcaaattaaatgactagaattacaggtagctaacttgatgatatttacattgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttgatgagcaaattaaatgactagaattacaggtagctaacttgatgatatttacattgc 742

                                                                       
Query: 181 ttccataaaacagttgaatatttgagcaaatttacagtttgactttcaatttgtatacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttccataaaacagttgaatatttgagcaaatttacagtttgactttcaatttgtatacca 682

                                                                       
Query: 241 ttgatggagaggtgtgttgctagatgattatgcactgagatacacttgtagaccctagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgatggagaggtgtgttgctagatgattatgcactgagatacacttgtagaccctagaa 622

                                                                       
Query: 301 gggcatgggccatagtctctgcagaaatatacctataacactggaaaacatgtcgctacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggcatgggccatagtctctgcagaaatatacctataacactggaaaacatgtcgctacc 562

                                                                       
Query: 361 atttatggattacattaggatgacctgttttatagcaaaatttgatatctttagaattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttatggattacattaggatgacctgttttatagcaaaatttgatatctttagaattat 502

                                                                       
Query: 421 tcttaaaaatcttactggttgaacctga--ttttttttttttagaaagcaattgtttttt 478
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 501 tcttaaaaatcttactggttgaacctgattttttttttttttagaaagcaattgtttttt 442

                                                                       
Query: 479 gcaaagttgatttcataacaactcaaaaagatttcttagttaatatgttaatttgtaaat 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaagttgatttcataacaactcaaaaagatttcttagttaatatgttaatttgtaaat 382

                                                                       
Query: 539 ctttttactataataaaagggcttagaggtagatgttatagatttcccatgtaagacaaa 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttttactataataaaagggcttagaggtagatgttatagatttcccatgtaagacaaa 322

                                                                       
Query: 599 caaacaaggcaaatttcaaaggaaagtcaaagaacaagcctcagcattgaaaaaataccc 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaacaaggcaaatttcaaaggaaagtcaaagaacaagcctcagcattgaaaaaataccc 262

                                                                       
Query: 659 tggcagctgctctagacccaactggtcccctagtcccagggacccacctggaattttcca 718
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcagctgctctagacccaactggtcccctagtcccagggacccacctggaattttcca 202

            
Query: 719 g 719
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1121
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1111
Effective search space:   787699
Effective search space used:   787699
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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