BAC Information

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BAC

Clone NameMSMg01-062M13
Chromosome19 (Build37)
Map Location 16,267,711 - 16,268,421
singlet/doubletsinglet
Overlap geneGnaq
Upstream geneEG635497, Pomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048, E030024N20Rik
Downstream geneLOC624438, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062M13.T7 (MSMg01no062_m13.b1)MSMg01-062M13.TJ (MSMg01no062_m13.g1)
ACCAG288677AG288678
length1,1631,209
length of high quality
(start - end)
---716 (86 - 801)
definitionCHROMAT_FILE: MSMg01no062_m13.b1 PHD_FILE: MSMg01no062_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:44 2005CHROMAT_FILE: MSMg01no062_m13.g1 PHD_FILE: MSMg01no062_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGTTTTTTGTNTNTACATTCGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCAGATATTTGGTGCAGCCCATTTTTGAATTGTGATTCCT
TTAGAGATACAGAAATAGACCAGAAGTGAGTCTGTTTCACGAGCATCCTG
AATCTCAAGGATGAGATCAGGACTAACAATTTCAAGCATGGCTCATTATT
GGACACTCAGAGTCATGAAGACAGGTCTAAATGACTACTGTAATCATTGA
ACATCAAATAATACTCCGGTTAGCGGTCCCCTAACTGTAGGTCATGAGAC
TGTGGTGAGACTGATAAGTGGTGGCCACCTAGGTGAAAATGTTACCTGAC
AAGTGTGGAGACCTGTCTCTCATGTAAAGCAAGGGATTCCTCAGTTCAGG
TTCTTCTTGTGTTAACATTATAAAGTACCCTGCAGAGGATACGCGTAGAG
TACCTTACATGCTATATACGAAATTCTGAATCGACTCCCTCCTATTGATA
ACTAATTCCGCCATGTATATTATGGCGACTGAGATGTGATATCTTATGCC
GCTGCACTGTTTTTATTTTTAATATATCATACTCTTGCTCTGCGCAAGAT
TAATCACCAACCCAATTTCATTGCACACTTTCTCCCTCATACAATCAGTC
TTGCTACCTGTTTTTCTCAAAGCAGCCGGACCCATTTTTTGCTAGATTAC
AGTATACATCTGAATAAGAGCTTGAGCACGTACTGCTGTTAACTTGAGAG
ATTGTATTTGATAGAGTTTTCACAGGCCTCGCGAATTTGTGCCTTATTCT
TTGCTTACTGAGAGAGATTTTCATGGCAGTCTTAGTTTTTAAAAATACGA
ACATTCTGACTCCGAACCAATTGCTACCTTCGTTATTGACTGAAACATCA
CTTGTATTTGATTTTATTGGGCAGACCTGATGTCAATATACTTGGTAAGA
GGTTCCAAAAATCCTGTCATTCGTTTTGTCATTTTACTTTAATCTAGGCT
GATACTCTTGTTTTCTCTCTCTGTAATTTACTTTTATTTTTTTTTTTGGA
ATACCAAGTTTTCTTGGTCTACTTCTAACCCTTTTGTTTTTTAAAATAAA
GTATTTTTTCATCTTTTTCCATTTGTTCCTCTCATATAATTTTTATTAAA
TGTGTGTATTTCC
CGTTCTTTTTNNNATAGATGTGAGCTGGXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAATAAGGTTTTACTAGTTAT
AAAAATGAAAAAATTACCCCAAGAATTTAATATGCCCACTTCAAAACACT
TGATAAAGTTATGAATTAATTTAAACCTACTTTATAGAGTATAAATCTTT
AGATTTTTAGCACAAAAAGTGGGCTTCTCAGCCAGATGTGATGGTGCACA
TGCACTCCCAGCACTCAGGAGAAGCAGGCAGGAGAATCAGGAGTGCAAGC
TCATTCTTCTTTAAACAAAAAAACAAAACTAAAACTAAAATTAGGAAATG
GAAAAGAATGTTTGTCTAAAACATTCAGAAGGCACTCTGAATTTTAGATT
TGACTAAAGTCTAATACACTGATGGCGTGTGTTTCTTCTATAGACCCTAC
CGTGGTGTTTCCTCACATTTTCAATGGGTCCAGGAATAGAAAACATCTAC
AATAAAGAAAACACATCATATAAAGCTTTTTATTATTATCATTATTATTT
CTTTTTTCATTATTATTTCTTAAAGAAATTTTTAAAAATTATGTTATCTT
CATTATTTAACATTAATAACATACCTATTAAAGTATTAATTTGCCAGTCT
TTGTTCTAAAGTTTGATATATTGATAAATTTTACCCTCCCAGGCAATTTG
TGAAATTATTTTCTCATTTTATATAGAAAGCCTGCATGATTAGGTCCAAA
ATTTGCTGGTGGGAATTTAAGGTCCCAGGCCTGCAGCTGTCCACCTGTCT
GTCCCACTCATGTATGCTACGCAACTGTTTCCTCCTTCATGTCATGAGTT
AGCACAGAGCTTCAAACCCCAGATTACTACCTGCCCACAGGGTCCACAAC
TGATGTCATACATCTGAGGGGGCCCCTAAAGACCTTGTTTCATGCAAGTA
TGGAGCCTTTTTTTCAGAATTTAAAATTATCACTTCCGCCCTCCTTTCAT
GTAAAAACCATGAAGCCTTAAAAAATGATTAAAATGGTAAAAATGTTAGT
TTATAAAGAATCCATTTTTTGCTTTTTTTGTTTTAAATTTAGGAAAAATA
TATTCCTCTTTTTTCTCATTTGGGGTTCCTCTTAAATTTTTAGGTGTAAA
TTTTTTCTAATAATAAATTTTCATTCGTGCGAATGTTCTCTTTTATGGTG
GTCTTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_m13.g1 MSMg01no062_m13.g1 CHROMAT_FILE:
MSMg01no062_m13.g1 PHD_FILE: MSMg01no062_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:44 2005
         (716 letters)



>mm_chr19_16267556_16268672
          Length = 1117

 Score = 1266 bits (655), Expect = 0.0
 Identities = 700/717 (97%), Gaps = 7/717 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggttttactagttataaaaatgaaaaaattaccccaagaatttaatatgcccacttcaaa 60
           ||||||||||| |||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 866 ggttttactag-tataaaaatgaaaaaattaaaacaagaatttaatatgcccacttcaaa 808

                                                                       
Query: 61  acacttgataaagttatgaattaatttaaacctactttatagagtataaatctttagatt 120
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 atgcttgataaagttatgaattaatttaaacctactttatagagtataaatctttagatt 748

                                                                       
Query: 121 tttagcacaaaaagtgggcttctcagccagatgtgatggtgcacatgcactcccagcact 180
           ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tttagcacataaagcgggcttctcagccagatgtgatggtgcacatgcactcccagcact 688

                                                                       
Query: 181 caggagaagcaggcaggagaatcaggagtgcaagctcattcttctttaaac-aaaaaaac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 687 caggagaagcaggcaggagaatcaggagtgcaagctcattcttctttaaacaaaaaaaac 628

                                                                       
Query: 240 aaaactaaaactaaaattaggaaatggaaaagaatgtttgtctaaaacattcagaaggca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aaaactaaaactaaaattaggaaatggaaaagaatgtttgtctaaaacattcagaaggca 568

                                                                       
Query: 300 ctctgaattttagatttgactaaagtctaatacactgatggcgtgtgtttcttctataga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 567 ctctgaattttagatttgactaaagtctaatacactgatggcgtgtgtttcctctataga 508

                                                                       
Query: 360 ccctaccgtggtgtttcctcacattttcaatgggtccaggaatagaaaacatctacaata 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ccctaccgtggtgtttcctcacattttcaatgggtccaggaatagaaaacatctacaata 448

                                                                       
Query: 420 aagaaaacacatcatataaagctttttattattatcattattatttcttttttcattatt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aagaaaacacatcatataaagctttttattattatcattattatttcttttttcattatt 388

                                                                       
Query: 480 atttcttaaagaaatttttaaaaattatgttatcttcattatttaacattaataacatac 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atttcttaaagaaatttttaaaaattatgttatcttcattatttaacattaataacatac 328

                                                                       
Query: 540 ctattaaagtattaatttgccagtctttgttctaaagtttgatatattgataaattttac 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctattaaagtattaatttgccagtctttgttctaaagtttgatatattgataaattttac 268

                                                                       
Query: 600 cctcccaggcaatttgtgaaattattttctcattttatatagaaagcctgcatgattagg 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||
Sbjct: 267 cctcccaggcaatttgtgaaattattttctcattttatatagaaagcctgcatg-gtggg 209

                                                                    
Query: 660 tccaaaatttgctggtgggaatttaaggtcccaggcctgcagctgtccacctgtctg 716
               |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ----aaatttgctggtgggaatttaaggtcccaggcctgcagctgtccacctgtctg 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1117
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1107
Effective search space:   781542
Effective search space used:   781542
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)