Query= MSMg01no063_f16.b1 MSMg01no063_f16.b1 CHROMAT_FILE:
MSMg01no063_f16.b1 PHD_FILE: MSMg01no063_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:41 2005
(295 letters)
>mm_chr19_54930284_54930977
Length = 694
Score = 547 bits (283), Expect = e-160
Identities = 292/295 (98%), Gaps = 1/295 (0%)
Strand = Plus / Plus
Query: 1 ggggcaggtgctggcagtgaattccatataagtgggggtaggtgctggctgtgacattcc 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 201 ggggcaggtgctggcagtgaattccatataagtgggggcaggtgctggctgtga-attcc 259
Query: 61 atataagtggaaccagttgctctgaactctgtaaaacaaggacagatacagattccacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atataagtggaaccagttgctctgaactctgtaaaacaaggacagatacagattccacca 319
Query: 121 gaggaattgtgatgcaaatcgaaggagagcgctcagtgcatagtggtgctacgatgagct 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 320 gaggaattgtgatgcaaatcgaaggagagcactcagtgcatagtggtgctacgatgagct 379
Query: 181 atgagaagtagtgatcttagcatgcataaggccacgtgatgcagaaattcataaatcata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atgagaagtagtgatcttagcatgcataaggccacgtgatgcagaaattcataaatcata 439
Query: 241 actttaaccagaattgaacacctattgttattctgtctttcatctttctgttctg 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 actttaaccagaattgaacacctattgttattctgtctttcatctttctgttctg 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 694
Length adjustment: 9
Effective length of query: 286
Effective length of database: 685
Effective search space: 195910
Effective search space used: 195910
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no063_f16.g1 MSMg01no063_f16.g1 CHROMAT_FILE:
MSMg01no063_f16.g1 PHD_FILE: MSMg01no063_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:41 2005
(282 letters)
>mm_chr19_55025647_55026328
Length = 682
Score = 485 bits (251), Expect = e-142
Identities = 275/283 (97%), Gaps = 2/283 (0%)
Strand = Plus / Minus
Query: 1 ttcagtctgtgttcgagttccaaaacatgcatcggagaaaag-ataccccaaacatttct 59
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 482 ttcagtctttgttcgagttccaaaacatgcatcggagaaaagcataccccaaacatttct 423
Query: 60 aaacaggatgcatctttatgaaattaattctacctgtcaaagagttgtcttgatgttaga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaacaggatgcatctttatgaaattaattctacctgtcaaagagttgtcttgatgttaga 363
Query: 120 gtttgtagacatttaattaaataggagtgaaatctaattttgcagttttcttttatattt 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtttgtagatatttaattaaataggagtgaaatctaattttgcagttttcttttatattt 303
Query: 180 taaagtggttttttttttccagctctcagacatttcacagatgctgaaaattccgtaggc 239
||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 302 taaagtg-ttttttttttccagctctcagacatttcacagatgctggaaattctgtaggc 244
Query: 240 acaccatgtggacagacttgaaatacaacggaccaaggaaata 282
||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 243 acaccttgtggacagacttgaaatacaacggactaaggaaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
