Query= MSMg01no063_m22.b1 MSMg01no063_m22.b1 CHROMAT_FILE:
MSMg01no063_m22.b1 PHD_FILE: MSMg01no063_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:19 2005
(548 letters)
>mm_chr19_7078973_7079921
Length = 949
Score = 857 bits (443), Expect = 0.0
Identities = 479/507 (94%), Gaps = 26/507 (5%)
Strand = Plus / Minus
Query: 6 gaattctctagtgtccatttctagttttctgccctcaa-acccagctggagaaccagcag 64
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 507 gaattctctagcgtccatttctagttttctgccctcaacacccagctggagaaccagcag 448
Query: 65 gtctgacttctcctgtgaccttgattcacacttcccagtgactaatggagtcctgctctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gtctgacttctcctgtgaccttgattcacacttcccagtgactaatggagtcctgctctc 388
Query: 125 ttttagctatcagccacttggatagccgctcagtgccatttctgctgatactcttggcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttttagctatcagccacttggatagccgctcagtgccatttctgctgatactcttggcag 328
Query: 185 tgtctgtactgtctaccttactaatttgtggatatgtgctatgcactttgcaatatttgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgtctgtactgtctaccttactaatttgtggatatgtgctatgcactttgcaatatttgt 268
Query: 245 cagagagagagagagtacgctctactccactccatgtgttgccttaaattcccttgcatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cagagagagagagagtacgctctactccactccatgtgttgccttaaattcccttgcatt 208
Query: 305 ttgacaaggtttctctgagtaactgtcctggaacctc----------------------- 341
|||||||||||||||||||||||||||||||||||||
Sbjct: 207 ttgacaaggtttctctgagtaactgtcctggaacctcactcattagaccaggctggactc 148
Query: 342 --actcacagagctctgcctgcctctggctcccaagcactggaattaagcacctgcacca 399
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 147 aaactcacagagctctgcctgcctctggctcccaagcactgggattaagcacctgcacca 88
Query: 400 ccgcaccccacttgccttttaattctcttatggtctgagaaaccattgtgttctgccatt 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 ccgcaccccacttgccttttaattctcttatggtctgagaaaccattgtgttctgccatt 28
Query: 460 gtgtttgtgtgtgtgacggtcttaggt 486
|||||||||||||||||||||||||||
Sbjct: 27 gtgtttgtgtgtgtgacggtcttaggt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 949
Length adjustment: 10
Effective length of query: 538
Effective length of database: 939
Effective search space: 505182
Effective search space used: 505182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_m22.g1 MSMg01no063_m22.g1 CHROMAT_FILE:
MSMg01no063_m22.g1 PHD_FILE: MSMg01no063_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:19 2005
(110 letters)
>mm_chr19_6922052_6922561
Length = 510
Score = 190 bits (98), Expect = 3e-53
Identities = 107/110 (97%)
Strand = Plus / Plus
Query: 1 acagaaatcctggcaaagccctggaagaagcaggtgtaactcggggcccaccccactgca 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 201 acagaaatcctggcaaagccctggaagaagcaggtgtaactcgggggccaccccattgca 260
Query: 61 ggtaagactactctatggaacttttttcttggacctgggggcgtactggg 110
||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ggtaagactactctatggaacttttttcttggacctgggggcgtagtggg 310
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 510
Length adjustment: 8
Effective length of query: 102
Effective length of database: 502
Effective search space: 51204
Effective search space used: 51204
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
|
