BAC Information

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BAC

Clone NameMSMg01-064L20
Chromosome19 (Build37)
Map Location 43,856,596 - 43,856,905
singlet/doubletsinglet
Overlap geneAbcc2
Upstream geneLOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc
Downstream geneDnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064L20.T7 (MSMg01no064_l20.b1)MSMg01-064L20.TJ (MSMg01no064_l20.g1)
ACCAG290126AG290127
length749755
length of high quality
(start - end)
316 (46 - 361)---
definitionCHROMAT_FILE: MSMg01no064_l20.b1 PHD_FILE: MSMg01no064_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:54 2005CHROMAT_FILE: MSMg01no064_l20.g1 PHD_FILE: MSMg01no064_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCGTCCATCGTGATTTCCAGGGCACTTCTGTTACGATGACTTTCTAT
GATTGTCTTGTTTCTTCTTTACCATCTGCCTCAAGGGAAGCAGATGTTAA
GGAGCAATGTGCTTTTCCCATCCTCACTGCCCAGTTAAAGGCAAGTCTCC
TGACCTTTCATCCTGACAACTTAATAGTTAACTTTGCTAGATGAATGCTA
TGTCATCCCAGTGAGCAGACATGTGACTGGGAATCACCAGATACAGGGAG
GCTTATCACTTCTCCAAAGCCCTGTCCCTGTAGTGTGACCAAATCTAGAA
AGAACCAATTAGAGTANNCACTGAGTCGGNNACGTCTTAAGTTCAGTATA
TAAAANGAAAGAGTGACCTATGCATACCTACTAAAAGGGTTTTACTTCAG
TTTGAACTCGGTTAAGAGTTCACAGAGATGTTAAATACCCATACCTCTGA
TTGTTGTTTTGTCTGGTTTGAGACCAGGTTTCTCTGTGTGGCACTCGCTG
TCCTGGAACTCACTCTATAGACCATGGTGGCCTCAAACTCACAGATATCC
ACCTGCCGATGCCTCCCAAGTCCTGGGATTAAAGGCATGCATCACCATGC
CTGGCTCCTCTGAGTTTTTTGATTAAGAACTTATAATAAACATAAAACAC
GGTTTAAAGTAATATAAACTTTGTTTGACAAAGTCAAGTTATATCACAG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCTAATACTTAAGTCACAATTTTTT
TTTTCAAATCTAACTTTCTCAAAGGAAAACTAACCATAATTAACCATAAG
GTTAATCATAATGGAATAATCGAATAATAAGCCAATAACCCCGTTCCCTC
TAAGGCCCCTCTTCAGGCCAACTGGGCCAGAATCGGGGGGGGGGAATTCA
AAAGGTTGGTCAGGTTCGGATTTTTCGGGCCAGCCCATTCAGGCCTTAAA
GGAAAAGGGAAGCCCACGTCCCTGGGCCCAGAAAAAGGCCGGGCACCCCC
TGGCCCTGGTTGGCCTAATTTTCTAACCCCCCGCCCCCGGAAATTCTCAC
AGGGGGGGGAACTAGGGCACCTGGCCAGAAGAAGGGATCGGGATCCAGGG
GAAGGCCCTGATCGGGAAAAACACAAAGGTTTCGGTGGGGTGGGGGAAAA
TCGAAAGGTCGCTTTGAGGGAATGTGAAACCTTGTGATGCCGTCCTGCAC
GCCCGGGAAAACAAACCTGCACTTAACCCTGAAGGAAAAAAACCGTTTCC
CTTTCTCGGATTACGCCCGAAACCGTTCCCAATTTGCCTTTCCAACTCAG
TTACCCTGGCCTTCAGCGCTCATTACCCTACTTACCCCCGTATAACCCCG
TATACTTACCTACCCTTTCCCATTCTTTCTCTCCCGTTTCCCACATATCC
CTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_l20.b1 MSMg01no064_l20.b1 CHROMAT_FILE:
MSMg01no064_l20.b1 PHD_FILE: MSMg01no064_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:54 2005
         (316 letters)



>mm_chr19_43856392_43857107
          Length = 716

 Score =  576 bits (298), Expect = e-169
 Identities = 307/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcgtccatcgtgatttccagggcacttctgttacgatgactttctatgattgtctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcgtccatcgtgatttccagggcacttctgttacgatgactttctatgattgtctt 455

                                                                       
Query: 65  gtttcttctttaccatctgcctcaagggaagcagatgttaaggagcaatgtgcttttccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtttcttctttaccatctgcctcaagggaagcagatgttaaggagcaatgtgcttttccc 395

                                                                       
Query: 125 atcctcactgcccagttaaaggcaagtctcctgacctttcatcctgacaacttaatagtt 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atcctcactgcccaattaaaggcaagtctcctgacctttcatcctgacaacttaatagtt 335

                                                                       
Query: 185 aactttgctagatgaatgctatgtcatcccagtgagcagacatgtgactgggaatcacca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aactttgctagatgaatgctatgtcatcccagtgagcagacatgtgactgggaatcacca 275

                                                                       
Query: 245 gatacagggaggcttatcacttctccaaagccctgtccctgtagtgtgaccaaatctaga 304
           ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 274 gatactgggaggcttatcacttctccaaagccctgcccctgtagtgtgaccaaatctaga 215

                     
Query: 305 aagaaccaat 314
           ||||||||||
Sbjct: 214 aagaaccaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)