Query= MSMg01no065_c13.b1 MSMg01no065_c13.b1 CHROMAT_FILE:
MSMg01no065_c13.b1 PHD_FILE: MSMg01no065_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:35 2005
(418 letters)
>mm_chr19_54930194_54931011
Length = 818
Score = 760 bits (393), Expect = 0.0
Identities = 408/413 (98%)
Strand = Plus / Plus
Query: 6 gaattccatataactggggggtaggtgctggccatgcattccgtataagtgggggcaggt 65
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccatataagtggggggtaggtgctggccatgcattccgtataagtgggggcaggt 265
Query: 66 gctggcagtgaattccatataagtgggggcaggtgctggcagtgaattccatataagtgg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gctggcagtgaattccatataagtgggggcaggtgctggcagtgaattccatataagtgg 325
Query: 126 gggtaggtgctggctgtgaattccatataagtggaaccagttgctctgaactctgtaaaa 185
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gggcaggtgctggctgtgaattccatataagtggaaccagttgctctgaactctgtaaaa 385
Query: 186 caaggacagatacagattccaccagaggaattgtgatgcaaatcgaaggagagcgctcag 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 386 caaggacagatacagattccaccagaggaattgtgatgcaaatcgaaggagagcactcag 445
Query: 246 tgcatagtggtgctacgatgagctatgagaagtagtgatcttagcatgcataaggccacg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgcatagtggtgctacgatgagctatgagaagtagtgatcttagcatgcataaggccacg 505
Query: 306 tgatgcagaaattcataaatcataactttaaccagaattgaacacctattgttattctgt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgatgcagaaattcataaatcataactttaaccagaattgaacacctattgttattctgt 565
Query: 366 ctttcacctttctgttctgggattgtgtattagaaaagtgatgtctccctgga 418
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 566 ctttcatctttctgttctgggattatgtattagaaaagtgatgtctccctgga 618
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space: 330881
Effective search space used: 330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_c13.g1 MSMg01no065_c13.g1 CHROMAT_FILE:
MSMg01no065_c13.g1 PHD_FILE: MSMg01no065_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:35 2005
(556 letters)
>mm_chr19_55051382_55052336
Length = 955
Score = 944 bits (488), Expect = 0.0
Identities = 539/556 (96%), Gaps = 1/556 (0%)
Strand = Plus / Minus
Query: 1 aatgaaaacggaactttcttgcagcaccagcacttaagggggattccagctgactgatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 aatgaaaacggaactttcttgcagcaccagcacttaagggggattccagctgactgatgg 696
Query: 61 gaaggggaaggagccttgggtgtggctgcgaggcatggacttctagaaggatggtttgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 695 gaaggggaaggagccttgggtgtggctgcgaggcatggacttctagaaggatggttttaa 636
Query: 121 acaaagagcttgtattgagcttgtgatagaagcattcctttttttctcatctctgaccag 180
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 635 acaaagagcttgtattgggcttgtgatagaagcattcctttttttctcatccctgaccag 576
Query: 181 cttctgtgaggcactcattgacctaacatttcggattaacctggatatcaggctcctttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cttctgtgaggcactcattgacctaacatttcggattaacctggatatcaggctcctttt 516
Query: 241 gaaggtcaaccctagctagagctcgtgaataagaggaccacacttttctgaattaagttt 300
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaaggtcaaacctagccagagctcgtgaataagaggaccacacttttctgaattaagttt 456
Query: 301 cgcctgatgagtttatcatttcttcaaagggctgggctcgccggctacgtttcctgggga 360
||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||
Sbjct: 455 cgcctgatgagtttatcgtttcttcaaagggctgggctgggtggctacgtttcctgggga 396
Query: 361 ggacgaatgtggtgtggcaggtttcagatctctgacgtctgttgtatcttttgccaagag 420
|||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||
Sbjct: 395 ggacgaatgtggtgtggcagatttcagatccctgacgtctgttgtatcttctgccaagag 336
Query: 421 cctgcctcttccatctcagctagcctctgtgtgtgtcttccccttgcggcagcaccaaga 480
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 335 cctgcctcttccatcttagctagcctctgcgtgtgtcttccccttgcggcagcaccaaga 276
Query: 481 gcctgcctcttccatcttagctagcctctgcgtgtgtcttccccttgcggcagcacctcg 540
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 275 gcctgcctcttccatctcagctagcctc-gcgtgtgtcttccccttgcggcagcacctcg 217
Query: 541 ttgctttgctcactga 556
||||||||||| ||||
Sbjct: 216 ttgctttgctccctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 955
Length adjustment: 10
Effective length of query: 546
Effective length of database: 945
Effective search space: 515970
Effective search space used: 515970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
