BAC Information

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BAC

Clone NameMSMg01-066E05
Chromosome19 (Build37)
Map Location 10,324,673 - 10,324,844
singlet/doubletsinglet
Overlap geneDagla
Upstream geneLOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98
Downstream geneSyt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066E05.T7 (MSMg01no066_e05.b1)MSMg01-066E05.TJ (MSMg01no066_e05.g1)
ACCAG291277AG291278
length767805
length of high quality
(start - end)
176 (46 - 221)---
definitionCHROMAT_FILE: MSMg01no066_e05.b1 PHD_FILE: MSMg01no066_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:00 2005CHROMAT_FILE: MSMg01no066_e05.g1 PHD_FILE: MSMg01no066_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGAGACCTTGCACAGCAAGGTGAGAGACAGCTGCAGCAGAGGGA
GGACCTGAGCAGAGACTGGCTTCTGCACTGAGCGCACGCACAGGCACAGA
GAACACATGCATGTACAATACACAACTATGCAGATTCTGAACCCACACTC
CCTCCCTTGGNGTCGAGTGGGGATGCAAGACTCACCTGACACTGCTGTTG
CGATGTTCTGTGTCTTGCTTTTCCCTGCCCACTTCTATGCCCAGAGGTGG
GCCCGCGCGCTATGGCTGTTTTTATTCCTATGTATTTGATAGTGCGGCTT
TTATATATGTATTTCACTTCGCCCCTTGTATAATATTAAAATAATATATT
CTCTATTTTTTCTAACTTTTATGTTTTCAACGCTATTATTTACGAACCAC
TATAGCATAATATAAATATCTCATACTATCTTCTTCCTACCCTCTGCATC
TTATATCTTCTTGTTGACTGTATATTCCTCTTCGTTCGCATTGGTTCTAT
CTTTTTTTTTCGCTTCTTTTTTACATTTTTTGATTTTTCTCCTCATTCAA
AAATATAAATAATCTTTTCTTTTTTTTATTTTTTCTCTAAATTATTTTTA
TCTACAAAGTTATATTTCACACATTATTAATTAATCATTAGTGAAACTAT
CTCAATCAAACCGTACTTCAGGTTTATATCTAAAATAAGATTATTTCAAC
ATATAATTAGTTAATTT
CGATGCTGTGGTAGCCTGGCGCCGCCTGGTTTGCGAAAAAAGGTGACCTA
TAGAAGGATTTTCGCAATCTCACTCCTGAGTAGATTGCCATTTGTCCACT
CACATAGACTCTCCTCCTTCCTTCCGAGGAACAGCAGAGGAGGTATTGTA
AGGCTTCTTGTAAGCTCGCGATCTGAATTCAATCCCTAGGCCCATCTCGG
CCCATATGCTTATCCCGTGCAACGTCCTCAGTTGTTCTGAGTGTTCTCCC
TTTTATATGTTGTTTCACACTTTTAGCTCTCTCCTACATATGTACTCCTA
AACAACTTCCATCAGCCCCGTTTTTTCTACAAAAATAACTACATCAACAA
TAGAGTACTAAAGCAACTTATTTACTCTAAATACAAATTATATAAAGCTA
TTTATTATTTTGTACATAATGATTATATGTTTATAGTTTTATTGATTCAC
TTATGTTTTAAAATATTTTTTCCATGTGTGTCATAAATATATAAAAAATG
ATATAATATTAAGATAGACTATTCTATACTGACTCATGAACAGCTCTGAA
TAGTCCTACATTCTGGAAAATCTATAAAATATAATATCAAATAATATGTA
AGATGTTCATAGTCCTACACAAAATCATTCCTTCTTATATATTTAAATTC
TCCCTCAAATCTGTTGTTTATAATACAATTACGACTCATCAACATATTAT
AAGTTACATTTCACACAACACAGCTAGGGACTGTATTCATGCAAACCCAT
ACAACCGAAACGNAACAAACGATAAGAGAGAAAACCATAGATAAATAATA
ACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_e05.b1 MSMg01no066_e05.b1 CHROMAT_FILE:
MSMg01no066_e05.b1 PHD_FILE: MSMg01no066_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:00 2005
         (176 letters)



>mm_chr19_10324470_10325044
          Length = 575

 Score =  313 bits (162), Expect = 3e-90
 Identities = 170/173 (98%), Gaps = 1/173 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctgagaccttgcacagcaaggtgagagacagctgcagcagagggaggacctga 63
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctgagaccttg-atagcaaggtgagagacagctgcagcagagggaggacctga 262

                                                                       
Query: 64  gcagagactggcttctgcactgagcgcacgcacaggcacagagaacacatgcatgtacaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gcagagactggcttctgcactgagcgcacgcacaggcacagagaacacatgcatgtacaa 322

                                                                
Query: 124 tacacaactatgcagattctgaacccacactccctcccttggngtcgagtggg 176
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 323 tacacaactatgcagattctgaacccacactccctcccttggggtcgagtggg 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 575
Length adjustment: 8
Effective length of query: 168
Effective length of database: 567
Effective search space:    95256
Effective search space used:    95256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)