BAC Information

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BAC

Clone NameMSMg01-067G23
Chromosome19 (Build37)
Map Location 50,704,934 - 50,705,224
singlet/doubletsinglet
Overlap geneSorcs1
Upstream geneLOC629448, Siah1-ps1, EG433251
Downstream geneLOC100042924
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067G23.T7 (MSMg01no067_g23.b1)MSMg01-067G23.TJ (MSMg01no067_g23.g1)
ACCAG292170AG292171
length705698
length of high quality
(start - end)
42 (264 - 305)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no067_g23.b1 PHD_FILE: MSMg01no067_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:32 2005CHROMAT_FILE: MSMg01no067_g23.g1 PHD_FILE: MSMg01no067_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCATAATTTGCGGCCGCCATACGACGCCTATAGGTCGNGACCCGCANG
AANNCNCNANATGTTACCNNCAGCGGGAAGAGNCNGCCANNAAANCANAA
ACCCAGNAGAAGCAACGATTTTTCCCGAAAGAGAGGGGGAGAGAGAGAGA
GAGAGAGNGNGNGCANAGAAGAGAGAGCAAAGCGGAAGNGNNCANGNAGA
NGNGGANGNGAANAGGACAGGAGGGNNGACCNGCAAACANGCAACGANAG
GCAACGTTTTTCTTTGTGCTCCACCTAATTTTTGGGAACAGGCTCTCTCA
CTTAACCAGGAGCACACAGACTTTTTCATACTTTCNGGACGANGACCCCC
ACAGACGCGCAGACTTTTTTTTCTCCCCCCCACCCCCCCAGAGAGNACAG
AAGNAAGACAAAAGGCCGGACTCCGCCAAAAATATAAAAAAACCCTTGGG
GGTGGGGGACATCTGGATCATTTCTGTTGCATCATTCCTTCCATCCCCTA
TCAGTATTATTTTCATACCCTTCATCTCTCAATTATGCTCTACGAGATTC
ATTAGTCACTGTCCTGTCATAGATTTTATCTCTATATATGACCACAAATT
CCCTTATTCAAAAAACGACAAGCTTTCTCCTTATCGCTGACTCTTCTCTC
AGTTCCTTCGCCCAACCCATATCTTTTTTTTTTTTATAACCCACATACCC
ATCAT
NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTCTGAGAGAGGGTCCAAGGCAATG
GTCACAGGTGGTCACAAGGATTTGGCCTTTGAGTCAAGCATGAAGTTGCA
CAACAAGACATTATAGTGGCTAATGGATCCCTCTCTGGGATTTCCTTTTT
GCCTCCTACCACAATGCAAAAGCCTACACACGCAGATGGCATATTTCACT
AATACAAACAGAAGTCCAAGCAACAGATGCTTCAGGGACCAGGGGAAAGG
AGATCTCGATATTTCTCCAACAGCAACAACTTCAATGACAAATTTTTCCC
ACTGAGCATATTGAACCTTTATTACACAACCACGCAACTTTCAAGCCTCG
GGCACTCCATGGTATTTAAAAGAACGAGGATCAGAAGCATTAATTTTGTA
CAAAGAGTGCTAATGCAGAAGCTAGCATTGAAGAAAACAGAGAGAGAGAG
AGAGAGAGAGGTAGAAAGCACAAGTGAGGCTGAGTTACACGCTGTGAAGC
CACTACTGATAATGTCCAGTGATTGCAGTGCGCGTGTGTGAGTGTGTGTG
TGCGTGAGTGCGTGTTGGCGATTGTTGCTATACCCCAAAACATCAATATT
TCCCTTTATACTTTCCTCTCTTTTATTCTTTTCTTGCTCTTTAACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_g23.g1 MSMg01no067_g23.g1 CHROMAT_FILE:
MSMg01no067_g23.g1 PHD_FILE: MSMg01no067_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:32 2005
         (291 letters)



>mm_chr19_50704734_50705424
          Length = 691

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgagagagggtccaaggcaatggtcacaggtggtcacaaggatttggcctttgagtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tctgagagagggtccaaggcaatggtcacaggtggtcacaaggatttggcctttgagtca 432

                                                                       
Query: 61  agcatgaagttgcacaacaagacattatagtggctaatggatccctctctgggatttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agcatgaagttgcacaacaagacattatagtggctaatggatccctctctgggatttcct 372

                                                                       
Query: 121 ttttgcctcctaccacaatgcaaaagcctacacacgcagatggcatatttcactaataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttttgcctcctaccacaatgcaaaagcctacacacgcagatggcatatttcactaataca 312

                                                                       
Query: 181 aacagaagtccaagcaacagatgcttcagggaccaggggaaaggagatctcgatatttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aacagaagtccaagcaacagatgcttcagggaccaggggaaaggagatctcgatatttct 252

                                                              
Query: 241 ccaacagcaacaacttcaatgacaaatttttcccactgagcatattgaacc 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ccaacagcaacaacttcaatgacaaatttttcccactgagcatattgaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)