BAC Information

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BAC

Clone NameMSMg01-067I22
Chromosome19 (Build37)
Map Location 29,214,699 - 29,215,009
singlet/doubletsinglet
Overlap geneRcl1
Upstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3
Downstream geneLOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067I22.T7 (MSMg01no067_i22.b1)MSMg01-067I22.TJ (MSMg01no067_i22.g1)
ACCAG292264AG292265
length702701
length of high quality
(start - end)
315 (43 - 357)295 (73 - 367)
definitionCHROMAT_FILE: MSMg01no067_i22.b1 PHD_FILE: MSMg01no067_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:41 2005CHROMAT_FILE: MSMg01no067_i22.g1 PHD_FILE: MSMg01no067_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCATGGTCAGCAAGACCAGAAAGCCAGCAGGGGGAGAGCTGACTTCCC
CTAATTACCAAGATCGCTGACCTCCTTTCTCAGTTACCCCCAACACTTCA
GTTCTTAGTGTCTCAATAGCAGGGAGAGAGTTTCATGTGTGCAGGCCATC
ATTGTTGAGATACTTGTGTGACTTACCCAGAGGGTCAGCACTGTGTGGCT
GGCAGTCACTTATGTAGCCACTAAGCAGAGAACGCTGTATAAACTCCATT
AAGACAGCGAAGGATCAGATGGATGGGTGCTAGTGGCTAGGAAGGCTCTA
TGGAAGAATTTTATTTGCCCTTGCGCCGCACAGATGAAGTCGTATGGTCT
TACATGGAGGGTCAGCACAGTATATCTCAACTGAGCTATGGTGCTTAGCA
GTTGTTCCCTGTCTTGTGACATGCCTACAGCTCACACATAAGGCGAGTTG
ATCTGCTATGAGCTAGTCTCTTGGTATATTTCCCTCCTGTGAGTGGATCA
TGCTCAGATGATGTACATTCACCTTAGCAGGTTTCATCCTTAATTTCATC
TGTTACTGACTAGGTTTGGTACCTGCGTATATTAACTTTTTTAAACTCAC
CGATGTGTATAAATATAATTTATCCGGCCATACTGTTTACCTATTTACCG
CG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTAGTGAAGCCTTCCAGTCATGAGTTT
TCCTTTGTTAGAGACTTGATTTCTGCATCAATCTTGTTGATTATTATAGA
TCTTTAGAAGGTGGTTATATATTCCTGATTCAAGTTTAGTAGATCATACA
TGTCTAGGAATTTATTATTTTTTTATATAGATAGGTTTTTACAGTTCTTT
GAATTTAAATGGTCAAAGTTTTTCTAAATGATCCTCTGGATTTTACTGGA
ATCTGTGGTAACATCCAATTCTTCATCTCTAATGCCATTAATTTGATCAT
TCTCTCCCATTCTGTTGGTCAATTTGGCTATGGATTTGACAGCCTTGTCT
GTTTTTCCGGACAATCAACTCTTGGGTTGATTATTATGTACTGTTCTTCG
CATCCCCATTTCACTCATTTCTGCTCAGATCTTTATTATTTCTTGCTGTC
TACTGCTTTGGATTTTGGCTTCTCTTTTCTGTCTTTGAGCCTTTGAGATA
GTCCACTTGGATATATATCTGCCATCACTTTGATGTTTTTTATGTAAGCC
CTCCAGCTATAAACTTTCCTTTTAAAGACTGCCTTACATGTTTCCCACAG
AGACTAATACGTTGCGCCTTTTACTTTCGCTTATTTTTTCCACTTTTTCT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_i22.b1 MSMg01no067_i22.b1 CHROMAT_FILE:
MSMg01no067_i22.b1 PHD_FILE: MSMg01no067_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:41 2005
         (315 letters)



>mm_chr19_29214495_29215209
          Length = 715

 Score =  547 bits (283), Expect = e-160
 Identities = 304/311 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccatggtcagcaagaccagaaagccagcagggggagagctgacttcccctaatt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccatggtcagtaagaccagaaagccagcagggggagagctgacttcccctaatt 264

                                                                       
Query: 65  accaagatcgctgacctcctttctcagttacccccaacacttcagttcttagtgtctcaa 124
           ||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 accaagatcgctgaagtcctttctcagttacccccaacgcttcagttcttagtgtctcaa 324

                                                                       
Query: 125 tagcagggagagagtttcatgtgtgcaggccatcattgttgagatacttgtgtgacttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagcagggagagagtttcatgtgtgcaggccatcattgttgagatacttgtgtgacttac 384

                                                                       
Query: 185 ccagagggtcagcactgtgtggctggcagtcacttatgtagccactaagcagagaacgct 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccagagggtcagcactgtgtagctggcagtcacttatgtagccactaagcagagaacgct 444

                                                                       
Query: 245 gtataaactccattaagacagcgaaggatcagatggatgggtgctagtggctaggaaggc 304
           ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 gtagaaactccattaagacagcgaaggatcagatggatgagtgctagtggctaggaaggc 504

                      
Query: 305 tctatggaaga 315
           |||||||||||
Sbjct: 505 tctatggaaga 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)