BAC Information

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BAC

Clone NameMSMg01-067O13
Chromosome19 (Build37)
Map Location 43,767,231 - 43,926,383
singlet/doubletdoublet
Overlap geneEntpd7, Cox15, Cutc, Abcc2, Dnmbp
Upstream gene4833409A17Rik, Hps1, LOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28
Downstream geneLOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067O13.T7 (MSMg01no067_o13.b1)MSMg01-067O13.TJ (MSMg01no067_o13.g1)
ACCAG292530AG292531
length692693
length of high quality
(start - end)
271 (49 - 319)229 (76 - 304)
definitionCHROMAT_FILE: MSMg01no067_o13.b1 PHD_FILE: MSMg01no067_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:09 2005CHROMAT_FILE: MSMg01no067_o13.g1 PHD_FILE: MSMg01no067_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,926,117 - 43,926,383)(43,767,231 - 43,767,459)
sequence
NCGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTAAAATGCAGCAAGCTGAGAAGAACAGGGCTTTTTCAGAACC
TTCTTATCAAAACCTGAACTGAGTAACCCGAAAGAATTTGTAATCATAAC
TTACCTTATTAAATGAATACGTATTTGACATATACATATCCTCAAATCAA
AAAAGTATGAGTTCCAAAGACTGTGATGGCCCAAGTATTCTGGGGACCTA
GGCCAATTTTAGCATTTGCTCTTTAAACGCATCTTTATGAGGTGGCTCCT
TTGATCATGTTTTACCAGGTTGCAGTTAGAATTCGGACTCATAATCCATG
TATAAAAATCAGAGTTTTTTTTCTCACACCGCCCCCCCAGACAGCCTCTC
ATGACGGGGACCCAGTAGGGTCCCTGACTCTAGAAAACTAGAATCCTTCC
TGAGCAGGGTCCTGTTACCAATATAAAGACAATGTTTGGATGAGACTAAA
ATAATCCCAGCATTTAATGAAAAGGAGGAGTCAGGTCCTGCGTCTTCTCT
TTCTTAAGACAAGAAACACTGTGTGTTTGAAATGAGCGGTCAAGATCCCT
CTGTCACCATCAGGTAAATTTGTTGAAGCGAGCACGTGCTTGTAAACGTC
TGTGTGTTTTGGTCCTATTGTTCTCTGACCTTGATACCGTTC
NCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGATTTTTATTTTTTATTTTTG
ACAAACTCCTTACTTGGCTTTCACCCTGGAAAAAAAAAAATCTATGGTTA
AAGAACTCATGTGCTGATGGTTTTTTGTCCTGTGGGCTTCCATTCTTTCT
GAGAAGTCTGCCGCTGTGTGTCTCCTGTGTGCACGAGCCTCCTTTCCTCC
TAGAGCTTTCGAGATGCTCTCCTAGTGATCTGAAGCAGTATGCCTGGGCC
GTGCTTTGTGAGAGTTTGCTCTGTTATTAGTGTCTCTCACTCGGTAGCGG
TCATGCGTGTATATTTCTTTTCTGCCCCACCCTGAGGTACCAGGGTGACC
GTTAATGTGACCCTTGGATTTGCAGATCAGAAAAAGTAAACAGTTTTTAA
GACCAAATTTGGACAGCTTTTGACCATCGTCTTCTCACCGATTTTTCTGT
TCTCCTTTGGGGAATCTGGATACATGCGTTTTTGAGCCTGGACGTTTTCT
CTCAAGCTAAATGGTGATGTGTCGTTTTTTCTCTCCCTGTGTATTTTACC
CTGCATACTTTATTCTCTGTTAGGTTCCTGACTTTACATATTTAATTAGC
TAATTTCTTACTTAATTCCATTTATTTTCTTTAATTTTTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_o13.b1 MSMg01no067_o13.b1 CHROMAT_FILE:
MSMg01no067_o13.b1 PHD_FILE: MSMg01no067_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:09 2005
         (271 letters)



>mm_chr19_43925913_43926583
          Length = 671

 Score =  462 bits (239), Expect = e-135
 Identities = 260/267 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaaaatgcagcaagctgagaagaacagggctttttcagaaccttcttatcaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gaattctaaaatgcagcaagctgagaagaacagggctttttcagaaccttcttatcaaaa 412

                                                                       
Query: 65  cctgaactgagtaacccgaaagaatttgtaatcataacttaccttattaaatgaatacgt 124
           |||||||||||||||  ||||||||||||||||||||||| |||||| |||||||| |||
Sbjct: 411 cctgaactgagtaacaagaaagaatttgtaatcataacttgccttatgaaatgaatgcgt 352

                                                                       
Query: 125 atttgacatatacatatcctcaaatcaaaaaagtatgagttccaaagactgtgatggccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 351 atttgacatatacatatcctcaaatcaaaaaagtatgagttccaaagaccgtgatggccc 292

                                                                       
Query: 185 aagtattctggggacctaggccaattttagcatttgctctttaaacgcatctttatgagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aagtattctggggacctaggccaattttagcatttgctctttaaacgcatctttatgagg 232

                                      
Query: 245 tggctcctttgatcatgttttaccagg 271
           ||||||| |||||||||||||||||||
Sbjct: 231 tggctccgttgatcatgttttaccagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no067_o13.g1 MSMg01no067_o13.g1 CHROMAT_FILE:
MSMg01no067_o13.g1 PHD_FILE: MSMg01no067_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:09 2005
         (229 letters)



>mm_chr19_43767031_43767659
          Length = 629

 Score =  397 bits (205), Expect = e-115
 Identities = 223/229 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcgatttttattttttatttttgacaaactccttacttggctttcaccctggaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 201 tttcgatttttattttttatttttgacaaactccttacttggctttcattttggaaaaaa 260

                                                                       
Query: 61  aaaaatctatggttaaagaactcatgtgctgatggttttttgtcctgtgggcttccattc 120
           ||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 261 aaaaatccatggttaaagaactcatgtgttgatggttttttgtcctgtgggcttacattc 320

                                                                       
Query: 121 tttctgagaagtctgccgctgtgtgtctcctgtgtgcacgagcctcctttcctcctagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctgagaagtctgccgctgtgtgtctcctgtgtgcacgagcctcctttcctcctagag 380

                                                            
Query: 181 ctttcgagatgctctcctagtgatctgaagcagtatgcctgggccgtgc 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttcgagatgctctcctagtgatctgaagcagtatgcctgggccgtgc 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)