BAC Information

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BAC

Clone NameMSMg01-068O06
Chromosome19 (Build37)
Map Location 21,616,672 - 21,616,895
singlet/doubletsinglet
Overlap geneLOC100041633
Upstream geneE030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda
Downstream gene1110059E24Rik, 5730446C15Rik, Tmem2, EG433229, Trpm3, EG433230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068O06.T7 (MSMg01no068_o06.b1)MSMg01-068O06.TJ (MSMg01no068_o06.g1)
ACCAG293279AG293280
length674894
length of high quality
(start - end)
236 (90 - 325)155 (141 - 295)
definitionCHROMAT_FILE: MSMg01no068_o06.b1 PHD_FILE: MSMg01no068_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:28 2005CHROMAT_FILE: MSMg01no068_o06.g1 PHD_FILE: MSMg01no068_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGATCCGCGGAATTCCTTATGTTTACCACACTGGCCTCAAATTCACAG
AAATTCACCTGCATCTGCTTCCCAAGTACTGAGATCCCAGGCATGTGCTG
TATAAAAGACACAAATGCAAAGTAATATATGGTCTGTCATGGTGAACATT
CAGCATATACTATGAAAGAATTATAGAGCTTCCATCTTTGCTGATGCTGT
TGCTACATGCTCTATTAATTGTCAAGAGGCTGCATCTTCTGATGTTATTG
TTAGTGTAGTTGCTATAGCAACTGCATCTCGGATACTCTTCCTTGATCTA
CTTGGAACTAATATTTTGCCACTAAATTTAACAGGCATCATGCCTTTCAG
ATTTGTGCTGCATATATTCCAACCATACTGTGCCACCACATTTTGCCTCA
ACTATCATATGAACTCCAAAGACTTTGTGTAACGAATGAAACCTGTTGTG
CTCATCCTAACATTTATAAAATTTGTTGCTTCTTTATCTTACAATTTAGA
AACTCTCCCACATTTTGACTGGCATGTCTTTTATAGCATATTATTTTATT
GTCCTTCACTGGAGAATTCCTCTGTTTCTAGTTACATTTCATCAAGGATT
ATCTCTCGTATTCTGTATTACCAAAAAATTATGTTTTCTAATCTTTCTTG
GCTTCACTTTCGCATCCAATTTCG
NCCCCCCTTTTTTCTTTCATTTTTTTTTTTTTTTTTTTTTTTTTTNCCTT
TTATTTTTTTTNACACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTGAGTAT
TTTTGCATTGATATTCATAAGGGAAATTGCTCTGAAGTTTTCTTTCTTTC
TTTGGTCTTTGTGTGGTTTTGGTATCAGTGTAACTGTGGCTTCATGTAAC
AAATCCGATAATGTTCCTTCTGTTTCTATTTTGTGCAGTTTGAAGAGTAT
TGGTATTAGGTCTTCTTTGAAGTTCTGATAGAATTCTGCACTAAACCCAT
CTGGTCCTGGGCTTTTTGGGGGTGGGAGGTTGGTATATTTTTTTAATGTA
CTGTTTTTATATTCTTTATTACCTGCAATTATTGTTTTTTTACTCTTTTT
TCCCCTTTCTGCACTTTTTCCAACTTTATGATTTATTGTTTTTTTTATTT
TTCCCCACCAAATTTTATATATTGTTTTTTTTTTTTTTTATATCCCTTTC
ACTTTTTTCCTTTCTAACATATCTTAATCTTTATATAATTTCTCTTATAC
ATTGTCTCTAAACATCATCGTCTTTTCTCTTTTTTAATACCTTTACTCTT
ATATTTAAATTACAAAAAAATTTATTATTTTTTGCCAAGCTCACGCTAAG
ATTATTTCTTATTAACTAATTTAATTTCTCACATACCCTTACATTATACT
TTATTTTATTTATATCAATCCGCGCAATAGTTATTTTTACCTCCTTAATT
CTATATTTTGCTTATACTTCGTTTTTAACACATTACTCCTTCTTCTTTTT
TTCTCCACTTCTATCCCTCACATTTTTATTTTTTTTTATACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_o06.b1 MSMg01no068_o06.b1 CHROMAT_FILE:
MSMg01no068_o06.b1 PHD_FILE: MSMg01no068_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:28 2005
         (236 letters)



>mm_chr19_21616461_21617095
          Length = 635

 Score =  420 bits (217), Expect = e-122
 Identities = 223/225 (99%), Gaps = 1/225 (0%)
 Strand = Plus / Plus

                                                                       
Query: 12  tataaaagacacaaatgcaaagtaatatatggtctgtcatggtgaacattcagcatatac 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tataaaagacacaaatgcaaagtaatatatggtctgtcatggtgaacattcagcatatac 271

                                                                       
Query: 72  tatgaaagaattatagagcttccatctttgctgatgctgttgctacatgctctattaatt 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tatgaaagaattatagagcttccatctttgctgatgctgttgctacatgctctattaatt 331

                                                                       
Query: 132 gtcaagaggctgcatcttctgatgttattgttagtgtagttgctatagcaactgcatctc 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 332 gtcaagaggctgcatcttctgatgttattgttagtgtagttgctatagcaactgcatctt 391

                                                        
Query: 192 ggatactcttccttgatctacttggaactaatattttgccactaa 236
           |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ggatac-cttccttgatctacttggaactaatattttgccactaa 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 635
Length adjustment: 9
Effective length of query: 227
Effective length of database: 626
Effective search space:   142102
Effective search space used:   142102
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)