BAC Information

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BAC

Clone NameMSMg01-069O13
Chromosome19 (Build37)
Map Location 32,658,180 - 32,658,406
singlet/doubletsinglet
Overlap genenone
Upstream genePrkg1, 1810073H04Rik, Asah2, EG668042, Sgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1
Downstream genePapss2, Atad1, Pten, B430203M17Rik, 6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069O13.T7 (MSMg01no069_o13.b1)MSMg01-069O13.TJ (MSMg01no069_o13.g1)
ACCAG294056AG294057
length666682
length of high quality
(start - end)
247 (52 - 298)229 (122 - 350)
definitionCHROMAT_FILE: MSMg01no069_o13.b1 PHD_FILE: MSMg01no069_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:47 2005CHROMAT_FILE: MSMg01no069_o13.g1 PHD_FILE: MSMg01no069_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACGACTCCTATTCCGAGAGATCCGCGGAATTCTCATTGAGCACA
ACTGAATGGCCAATAAGCACCCAAAGAAAGAAATGTTCAACATCCTTAAT
CATCCCGGAAATGCAACCCAAAACAACCAGTCAGAATGGCTAAGATCAAA
AACTCAGGTGACAGCAGATGCTGTCGAGGATATGGAGAAAGAGGAACACT
CCTCCATTGCTGGTGGGATTGTAAGCTGGTACAACCACTCTGGAATCAGT
CTGGAGGTTCCTCAGAAAATTGGACATGATACTACCTGAGGACCCAGCTA
TTCCTCTCCTGGGCATATACCCAAAAGATGGTCCAACATATTTTTTTTTA
TACCTGCCCCACCATGTTCATAGCAGCCTTATTTATAATAGCCAGATGCT
ATAAAGAAACAAAATGTCCTTCATCAGAGGAATGGATACAGATAATGTGG
TACATTTATACAATGGAGTATTACTCATCTATTAGAAACAATGACTTCAT
AAAATTCTTAGGCTGATGAACGAACCTAGAACGTATCATCCTGAGTGATG
TACCCCAGCCTCTAAAAGAATACACATGGTATGTTCTCCCTGATAAATGG
TCATTAATCCTAATGTCCGTAACATCCACCGTATCCATTCTTTCACTTAT
TTGAAGTTTCCAGATA
CATGATGTGATAGCCTGGCGGCGCCTGGTTCCAAAATATAGGTGACCTAT
AGAAGTTTCACAGAAATTCTGAGTCTTACATTTGTTTATTTTGATATTTT
TGAGACAGTTTCTCCCCCTCAGCCTTGGCTGTCTTGGAACTTACTGTGTA
GCCCAGGTTGGCTCCTAACTCAGAGGGGTTTGCCTCTGCCTTCTGAGTGT
TGGGATCAAAGGCTTATGCCACTAAACTTGGCTCTTTGCACTTTTAAATT
TTCATTGTAGAAATATTTTACTTCTTGTTTATTTATGTTTATTCATAGGA
ATCTTTTCAAGGTTTTTGTGAATGGATCCCCCTCCCCCCCCAATTTCATT
CTTGTCTAGTTCTCCCCCCCCCCCCCCAAAAACTATTGTTTTTCTGAGCT
GATTCTGTACCTCTTTAAAAGAAAAAATCATAGCTAAGAGTGTCTGCTAT
GAAATCTTTAACGTCTTTCAATCATGGAAACTCATGCCATGGGACTCTAC
TCTCCACCTGATTCCCTCTTTTCCTATTTTTCACTAGCCTATTACCTTTC
CTTCTTCGTCTGCTTCGTCTTTCACCTGAAGCATTCATTACTGATTTCGA
GCTGAATTGGCTTCTGCTTCAACTGGATGTTTCTCCTGTTTCCCTATGCT
TTCTTTATCCCCTTTCTCTCCTTTCGCCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_o13.g1 MSMg01no069_o13.g1 CHROMAT_FILE:
MSMg01no069_o13.g1 PHD_FILE: MSMg01no069_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:47 2005
         (229 letters)



>mm_chr19_32657868_32658496
          Length = 629

 Score =  364 bits (188), Expect = e-105
 Identities = 218/228 (95%), Gaps = 2/228 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   cttggctgtcttggaacttactgtgtagcccaggttggctcctaactcagaggggtttgc 62
           |||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 539 cttggctgtcctggaacttactgtgtagatcaggttggctcctaactcagaggggtttgc 480

                                                                       
Query: 63  ctctgccttctgagtgttgggatcaaaggcttatgccactaaacttggctctttgcactt 122
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 479 ctctgccttctgagtgttgggatcaaaggcttatgccactaaacctggctctttgcactt 420

                                                                       
Query: 123 ttaaattttcattgtagaaatattttacttcttgtttatttatgtttattcataggaatc 182
           |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 419 ttaaattttcattgtagaaatattttacttcttgcttatttacgtttattcataggaatc 360

                                                           
Query: 183 ttttcaaggtttttgtgaatggat-ccccctccccccccaatttcatt 229
           ||||||||| |||||||||||||| |||||| |||||| |||||||||
Sbjct: 359 ttttcaaggattttgtgaatggattccccctacccccc-aatttcatt 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)