BAC Information

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BAC

Clone NameMSMg01-070L01
Chromosome19 (Build37)
Map Location 12,285,931 - 12,286,178
singlet/doubletsinglet
Overlap genenone
Upstream geneMs4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431
Downstream geneOlfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070L01.T7 (MSMg01no070_l01.b1)MSMg01-070L01.TJ (MSMg01no070_l01.g1)
ACCAG294651AG294652
length776690
length of high quality
(start - end)
260 (116 - 375)249 (75 - 323)
definitionCHROMAT_FILE: MSMg01no070_l01.b1 PHD_FILE: MSMg01no070_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:51 2005CHROMAT_FILE: MSMg01no070_l01.g1 PHD_FILE: MSMg01no070_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCATTTTTCT
TTTCTTCTTCCCTCCTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCCGCGGAATTCCTGATCTTCCCAGACTTTTATCATGAATGG
GTGTTGGATTTTGTCAAATGATTTCTATGCATCTAACGAGATGATCATGT
GGTTTTTGTCTTTGAGTTTGTTTATGTTGTGGATTACGTTGATGGATTTC
CATATATTAAACCATCCCTGCATCCCTGGAGTGAAACCTACTTTGTCAGG
ATGGATGATTGCTTTGATGTGTTCTTGGATTCAGTTAGCAAGAATTGTAC
TGAGTATTTTTGCATCGATATTCATAAGGACAATTGTTCTGATGTTCTCT
ATCCTTGTTCAGACTTTCTGTGGTTTAGGTATCATAGTAATTGTGGCTTC
ATAGAATGAGTTGTACTAGAGTACCTTTATACTTCCATTTTGTGTAATAT
TTTGTGAATAACTGTATTTATAACTTCTTTTGAAGATCTGATAGATCTCT
GCACTAAACCAATCTGGTCATGAATTTTCCTTCATTTTTTTTTATTTCTT
CTTTTTTCAATTATCTCTCTCCTGTGGATACTTTTCATTGGCCTCGTTTT
TATTTCTTTTTTGCCACTTTATCCTCTGTTTTAAAATATTACCTCGATCT
CTGACTTTACTTTGCTTACTCTTTAATTTGTTCTTGTATCTTTGCTCATT
CTCATGTAATTTATTCCATTTTTTTT
NACAATGTAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGTATTGTGTGGGTTTAAGTGAGTG
ATGGAATGGTGGTAGTAGAATAGCTAAAAGTTTACTCTGGTATTTCTGAG
TATTTCATTGGAACTATTTTCTCTAGGTACACATAATCTTCACCATCATG
AAACATGAATGATTTCCTTACACAATACCTGGTTTATAGCCTTGGGAATG
AAATATTTACATGAGTACATTGATAAGCATGGCCACTGAAATGAAAATGA
TAGAATGTTATTATCATCTCCAGATCCAAGAGTCATGATTTACACCTCTA
ATTCCAGCATTAATACGCCTGGAGGATTCCATAGGGCTTCAGACCAACTT
GTTCTACAGTTTGAGACCATGATAATTTCTATTAAACAAAGGTTCGAACA
TACCCATTCAAGCAAACTCCCTTCTTGAAAAAGGTAATCCTAACACCTTT
ACTTGATATGATAGTCCTTAGTCTTTTTCCCCAGTTTCATTTTAATACTA
CTATGTGTTCGCTTTTGTCTTTTGTTAACTTGGATTTTTTCCTGCTAAAA
ATATGTAGTCCTTGTTAGATCTTTTACTGCTGCCTCCTCACTTAATTATG
GGTATTCTTAGTATACCATGCCTGAAAATCTTAATTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_l01.g1 MSMg01no070_l01.g1 CHROMAT_FILE:
MSMg01no070_l01.g1 PHD_FILE: MSMg01no070_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:51 2005
         (249 letters)



>mm_chr19_12285730_12286378
          Length = 649

 Score =  456 bits (236), Expect = e-133
 Identities = 245/248 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   agtattgtgtgggtttaagtgagtgatggaatggtggtagtagaatagctaaaagtttac 61
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 202 agtattgtgtgggtttaagtgagtgatggaatggtggtagtagaatagttaaaagtttac 261

                                                                       
Query: 62  tctggtatttctgagtatttcattggaactattttctctaggtacacataatcttcacca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 262 tctggtatttctgagtatttcattggaactattttctctaggtacacataaccttcacca 321

                                                                       
Query: 122 tcatgaaacatgaatgatttccttacacaatacctggtttatagccttgggaatgaaata 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcatgaaacatgaatgatttccttacacaatacctggtttatagccttgggaatgaaata 381

                                                                       
Query: 182 tttacatgagtacattgataagcatggccactgaaatgaaaatgatagaatgttattatc 241
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 382 tttacatgagtacattgataagcatggccactgaaatgaaaatgatagcatgttattatc 441

                   
Query: 242 atctccag 249
           ||||||||
Sbjct: 442 atctccag 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)