BAC Information

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BAC

Clone NameMSMg01-070N12
Chromosome19 (Build37)
Map Location 23,900,808 - 23,994,557
singlet/doubletdoublet
Overlap geneApba1
Upstream geneTrpm3, Klf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1
Downstream geneGm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070N12.T7 (MSMg01no070_n12.b1)MSMg01-070N12.TJ (MSMg01no070_n12.g1)
ACCAG294769AG294770
length697692
length of high quality
(start - end)		578 (66 - 643)579 (70 - 648)
definitionCHROMAT_FILE: MSMg01no070_n12.b1 PHD_FILE: MSMg01no070_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:03 2005CHROMAT_FILE: MSMg01no070_n12.g1 PHD_FILE: MSMg01no070_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,900,808 - 23,901,385)(23,994,039 - 23,994,557)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATAGGATATTCCGTGAACTTTTAGGGCGATATTATGTAACAAAACTAA
TGGAAGAACAAGATTCTTGGAGGAGAAAGATTCAAGAATCTTAGGAGCTA
TGTTTATTTTGACATCATCCAGAATGATGATAGCCAGGAAATTTCCAGGG
CCCAGAGGACAAAGTGAAGTGAGTCAGAGGTAGTTGGATGCCTAAGACAG
CTCGAAAGAGCTTTAGGGAGCAAGGATAAAATGATACGGAAGCTTTATTG
AGAAATAAGGACGATAGTGATTGTTCCTCTGGGCAGAAAAGTAAGAGTCA
TGCTAAAGAAACAGTCACCGCTGAAACTCTATAGAGGAAGGATGGCCCTG
CTGAGAGAACTGGCTTGTGGCCATAAAGAGACCATAAAGGACATTCTCAG
ATTAAGATGGCCCACATAGGAGCCAGCTGATCAAGATTTCAGTTTGGGGA
TTGTCTGAGTCAGGGAAGACCTCGTGTCTGTCAACCAGAAATTACTTTGG
TAAAGCAATAAAAACAAATGTGAGTTGGTGCCCGTGGTGATCTGCCCTGT
ATGAAGTTCAGCAGATACAATCCCAGTCCCCACCCCAGTGGAATTTACAG
TCAAGGAGAAGAGCTTGATACGGATGTCCCTCCAAGGTCCATGTGTC

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTCCCCAGGGATTAAGGGTTACTGATGGCA
AGAGTTTGGATAATACACCGTGGACAGTAAAAACTGCTCATGGCATTTCA
AATGGAAATGAGGAATTTATTTGGAAACTGGACTAGTGGCCATTTGTGTG
AGATTTTGTCCATATGCCAAGACTTTGTGTTAGGTTCTATTTAAATCTAG
CAGAGGGAATTTTAAGACAGCCTCCGTTCAGGCTATTGCATGGGCACTGA
TGTTGCTCTGGGTTAGATTTACAGTTAGAATGGGGAGTAGAGGCAGGGTG
GAAAGACATGAGAACCTTTCAGTTTGCTTTAAAGTCCAAGAAAAGTTTGA
GTTATGGAAGGCATGGTTTCTAAAAAGTTAAGTTCCCAGCAGAAGAGAAG
TACTTCGTTGCAAGATGCCTTGAAGACAACTTAGGAACCAGCAGGCTTTT
TATTCATTGTAAGTTCAGTGATGTGAGAATGTAAATTGACTTGAAAGACT
TTCCCTGGAAAGAGAAGGCTGCTGGGGTGCTCTGAATGCATACAGATGCC
TAGGGAGTTGTTACCATGGAAATCATTTTGTTGTGCTCAGCTGCCCAGAC
ACTCAGAGGCTCCTGTAGCCATGACCCAAGGAGGTCCAGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_n12.b1 MSMg01no070_n12.b1 CHROMAT_FILE:
MSMg01no070_n12.b1 PHD_FILE: MSMg01no070_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:03 2005
         (578 letters)



>mm_chr19_23900608_23901585
          Length = 978

 Score = 1017 bits (526), Expect = 0.0
 Identities = 565/578 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaacttttagggcgatattatgtaacaaaactaatggaagaacaagattcttggaggag 60
           ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tgaacttttagggcgatattacgtaacaaaactaatgggagaacaagattcttggaggag 260

                                                                       
Query: 61  aaagattcaagaatcttaggagctatgtttattttgacatcatccagaatgatgatagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagattcaagaatcttaggagctatgtttattttgacatcatccagaatgatgatagcc 320

                                                                       
Query: 121 aggaaatttccagggcccagaggacaaagtgaagtgagtcagaggtagttggatgcctaa 180
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 321 aggaaatttccagggcccagaggacggagtgaagtgagtcagaggtagttggatgcctaa 380

                                                                       
Query: 181 gacagctcgaaagagctttagggagcaaggataaaatgatacggaagctttattgagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacagctcgaaagagctttagggagcaaggataaaatgatacggaagctttattgagaaa 440

                                                                       
Query: 241 taaggacgatagtgattgttcctctgggcagaaaagtaagagtcatgctaaagaaacagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaggacgatagtgattgttcctctgggcagaaaagtaagagtcatgctaaagaaacagt 500

                                                                       
Query: 301 caccgctgaaactctatagaggaaggatggccctgctgagagaactggcttgtggccata 360
           ||||||||| ||| |||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 501 caccgctgagactttatagaggaaggatagccctgctgagagaacgggcttgtggccata 560

                                                                       
Query: 361 aagagaccataaaggacattctcagattaagatggcccacataggagccagctgatcaag 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 aagagaccataaaggacattctcaggttaagatggcccacataggagccagctgatcaag 620

                                                                       
Query: 421 atttcagtttggggattgtctgagtcagggaagacctcgtgtctgtcaaccagaaattac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 atttcagtttggggattgtctgagtcagggaagacctcgtgtctgtcaaccagaagttac 680

                                                                       
Query: 481 tttggtaaagcaataaaaacaaatgtgagttggtgcccgtggtgatctgccctgtatgaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 tttggtaaagcaataaaaacaaatgtgagttggtgcccgtggtgatctgccttgtatgaa 740

                                                 
Query: 541 gttcagcagatacaatcccagtccccaccccagtggaa 578
           ||||||||||||||||||||||||| |||| |||||||
Sbjct: 741 gttcagcagatacaatcccagtccctaccctagtggaa 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no070_n12.g1 MSMg01no070_n12.g1 CHROMAT_FILE:
MSMg01no070_n12.g1 PHD_FILE: MSMg01no070_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:03 2005
         (579 letters)



>mm_chr19_23993579_23994557
          Length = 979

 Score =  973 bits (503), Expect = 0.0
 Identities = 515/519 (99%)
 Strand = Plus / Minus

                                                                       
Query: 61  aaaactgctcatggcatttcaaatggaaatgaggaatttatttggaaactggactagtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 aaaactgctcatggcatttcaaatggaaatgaggaatttatttggaaactggactagtgg 920

                                                                       
Query: 121 ccatttgtgtgagattttgtccatatgccaagactttgtgttaggttctatttaaatcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 ccatttgtgtgagattttgtccatatgccaagactttgtgttaggttctatttaaatcta 860

                                                                       
Query: 181 gcagagggaattttaagacagcctccgttcaggctattgcatgggcactgatgttgctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gcagagggaattttaagacagcctccgttcaggctattgcatgggcactgatgttgctct 800

                                                                       
Query: 241 gggttagatttacagttagaatggggagtagaggcagggtggaaagacatgagaaccttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 799 gggttagatttacagttagaatggggagtagaggcagggtggaaagacatgagaaccttg 740

                                                                       
Query: 301 cagtttgctttaaagtccaagaaaagtttgagttatggaaggcatggtttctaaaaagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cagtttgctttaaagtccaagaaaagtttgagttatggaaggcatggtttctaaaaagtt 680

                                                                       
Query: 361 aagttcccagcagaagagaagtacttcgttgcaagatgccttgaagacaacttaggaacc 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 679 aagttcccagcagaagagaagtacttcgttgcaagatgccttgaaggcaacttaggaacc 620

                                                                       
Query: 421 agcaggctttttattcattgtaagttcagtgatgtgagaatgtaaattgacttgaaagac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agcaggctttttattcattgtaagttcagtgatgtgagaatgtaaattgacttgaaagac 560

                                                                       
Query: 481 tttccctggaaagagaaggctgctggggtgctctgaatgcatacagatgcctagggagtt 540
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tttccctggaaagagaagactgctggggtgctctgaatgcatacagatgcctagggagtt 500

                                                  
Query: 541 gttaccatggaaatcattttgttgtgctcagctgcccag 579
           |||||||||||||||||||||||||||| ||||||||||
Sbjct: 499 gttaccatggaaatcattttgttgtgcttagctgcccag 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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