BAC Information

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BAC

Clone NameMSMg01-070P16
Chromosome19 (Build37)
Map Location 13,823,414 - 13,823,644
singlet/doubletsinglet
Overlap geneOlfr1494
Upstream geneZfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1
Downstream geneOlfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505, EG667433, Tle4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070P16.T7 (MSMg01no070_p16.b1)MSMg01-070P16.TJ (MSMg01no070_p16.g1)
ACCAG294872AG294873
length707705
length of high quality
(start - end)
235 (73 - 307)500 (67 - 566)
definitionCHROMAT_FILE: MSMg01no070_p16.b1 PHD_FILE: MSMg01no070_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:14 2005CHROMAT_FILE: MSMg01no070_p16.g1 PHD_FILE: MSMg01no070_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCCGCTCTACGACTCCTATAGTACGGACCGGGCGGAATTCAGGG
ACTTTGCAGAAAAACGGAACACAACTCAGTGGTCCCAGACTGATTGAGGA
CAGACTTCCCACCCAGCATGTCTAGTGTGAAAAGCAAGCAAGCAAGCAAA
CAAATAAACAAAGAAAATGCAGTCTCTTATTTACTGAGTTGCTTCAAGCC
CAAGGAAAATCAGGGAGACTGAATCTGACTTTTTCTTCTATGATTTCCTT
CTTAAAATTTAGTTTCAATCCCAATATTGGGATATTCACAATTAAAAGTC
TGATTCACTAAACCTTAGAAATCTTAGTAATGGAGATGTTTGTCTACAGA
CAAATTCCTGAATAAAACTGGTAGATGCTTCTTCCATTTATTTCAATATT
TTAATTTAACTGAGAAGACCTAACATTTCATTTGTATACAAAATGGAATA
TTTTGTACACATCTTGTAAACAGAACATATATCTAACTATGTTTAAAGCT
AGATAAATGGTTCAAGTTTTTGATATAGATTCTTAGATGGACTATATGCA
GATATCAGTATGTAAAGCCCATGTAAAGATCTTAGGAAGTTTTTTTTGCA
TAAAATTAAATCACTACCTAGATGAATATTTTTTTTCGTAAACATACAGA
CACTTTCGCTATCACTTTCACCTTTATGTATCAGAACTCTAATCACTCTT
TCAGCTT
TGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGTAGATCTCTTCTATTTCATGAGCATTTCTTTC
TTTAGGTTAGGGAAGTATTTTTTCTATAATATTGTTGAAGGTATTAATGT
GCCTCTAAGTTGAAAATCTTCATTCTCATCTATACATATTATCCTTAGGT
TTGGTCTTCTCATTGTGTCCTGTTTTTCCTGGGTGTTTTGAATTAGGATC
TTTTTGCATTTTCTTTGATTGTTGTGTGCATGTTCTATTGAATCTTCTAC
ACCTGAGGTTCTCTCTTCCATTTCTTGTATTCTGTTGCTGATGCTCACAT
CAATGGTTCCTGATTTCTTTCCTAGGATTTCTATCTCCAGACTTGTCTCC
CTTTGGGTTTTCTTTAGTGTTTCTAATCCATTTTTAGATCTGGGATGGTT
TTGTTCAATTCCATTACCGGTTTGGTTGGGTTTTCCTGTAATTCTTTAAG
AGTTTTTTGTGTTCCCTCTTAAGGACTTCTACTTGTTTAGTAATGCTTTC
CTGTAATTCTTTAAGAGCTTCCACTTGTTTCGCAGTGTTCTCTTCTATTT
CTTTAAGTGAGTTATTAATGCCCTTCTTAAAAAACTCTACCACCATTCTG
AGATATTATTTTAAATCCGAGTCTTGCTTTTTGGTTGAGTTTGGGTAATC
AGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_p16.b1 MSMg01no070_p16.b1 CHROMAT_FILE:
MSMg01no070_p16.b1 PHD_FILE: MSMg01no070_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:14 2005
         (235 letters)



>mm_chr19_13823125_13823759
          Length = 635

 Score =  424 bits (219), Expect = e-123
 Identities = 228/231 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactcagtggtcccagactgattgaggacagacttcccacccagcatgtctagtgtgaaa 60
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 520 aactcagtggtcccagactgattgaggacagacttcccagtcagcatgtctagtgtgaaa 461

                                                                       
Query: 61  agcaagcaagcaagcaaacaaataaacaaagaaaatgcagtctcttatttactgagttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agcaagcaagcaagcaaacaaataaacaaagaaaatgcagtctcttatttactgagttgc 401

                                                                       
Query: 121 ttcaagcccaaggaaaatcagggagactgaatctgactttttcttctatgatttccttct 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttcaagcccgaggaaaatcagggagactgaatctgactttttcttctatgatttccttct 341

                                                              
Query: 181 taaaatttagtttcaatcccaatattgggatattcacaattaaaagtctga 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 taaaatttagtttcaatcccaatattgggatattcacaattaaaagtctga 290


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)