Query= MSMg01no072_j20.b1 MSMg01no072_j20.b1 CHROMAT_FILE:
MSMg01no072_j20.b1 PHD_FILE: MSMg01no072_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:24 2005
(427 letters)
>mm_chr19_35650201_35651028
Length = 828
Score = 774 bits (400), Expect = 0.0
Identities = 418/424 (98%), Gaps = 1/424 (0%)
Strand = Plus / Plus
Query: 5 gaattctctgccaaa-tgcattaacaggttttaattaagagaaaccgtgacacagataca 63
|||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gaattctctgtcaaaatgcattaacaggttttaattaagagaaaccatgacacagataca 264
Query: 64 tatctgtgcatgtgtacctctgtgcctcaaactatgaatgtgtgtgtagcatatagacat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatctgtgcatgtgtacctctgtgcctcaaactatgaatgtgtgtgtagcatatagacat 324
Query: 124 taaattgggggccagtcacagttgaaaaatcccatttgcctcataccaaatgcctgcccc 183
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaattcccggccagtcacagttgaaaaatcccatttgcctcataccaaatgcctgcccc 384
Query: 184 aattatcctctcctcaaaagtccatgcaagttcctaagaatgcttttggcttccaccccc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattatcctctcctcaaaagtccatgcaagttcctaagaatgcttttggcttccaccccc 444
Query: 244 aacttgtgagcatttcagcaacactataaagcaggctgaatcgtggaagcagacagaagt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacttgtgagcatttcagcaacactataaagcaggctgaatcgtggaagcagacagaagt 504
Query: 304 taattatattttagtgccagggctccaaaaaaagattatttctcctcctgagcccatttc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taattatattttagtgccagggctccaaaaaaagattatttctcctcctgagcccatttc 564
Query: 364 aatgtgataagcacacctgtgccgcctctcagtctgcaatctcttcacttcccaccttcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatgtgataagcacacctgtgccgcctctcagtctgcaatctcttcacttcccaccttcc 624
Query: 424 atgg 427
||||
Sbjct: 625 atgg 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 828
Length adjustment: 9
Effective length of query: 418
Effective length of database: 819
Effective search space: 342342
Effective search space used: 342342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_j20.g1 MSMg01no072_j20.g1 CHROMAT_FILE:
MSMg01no072_j20.g1 PHD_FILE: MSMg01no072_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:25 2005
(611 letters)
>mm_chr19_35767043_35768053
Length = 1011
Score = 1135 bits (587), Expect = 0.0
Identities = 605/611 (99%)
Strand = Plus / Minus
Query: 1 tcacatttgagacaaatgcattttcgttctgctaaatatgtaggtccagaaatgaagcaa 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 811 tcacatttgagacaaatgcattttagttctgctaaatatgtaggtccagaaatgaagcaa 752
Query: 61 atttttaaagtggcataatcacaaagcctcagcctcccagagatgcagtgcatgtgctga 120
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 751 atttttaaagtggcataatcacaaagcctcagcctcccaaagatgcggtgcatgtgctga 692
Query: 121 ctagctagaaagtcaagctccacatacactgcttccttcactagtcagttgtctacaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ctagctagaaagtcaagctccacatacactgcttccttcactagtcagttgtctacaaaa 632
Query: 181 gcactctggtggctccaggctccagcttcattttctcacaggtcatgtttcttatgtgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gcactctggtggctccaggctccagcttcattttctcacaggtcatgtttcttatgtgag 572
Query: 241 aggaacactatctgaaaaaattccaagtcatgctcaagctggtaacgctaggtgggaaat 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aggaacactgtctgaaaaaattccaagtcatgctcaagctggtaacgctaggtgggaaat 512
Query: 301 aggcattgtaataaattccaggcaagccagaggaagggcgtctcaaagtcatatttttgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aggcattgtaataaattccaggcaagccagaggaagggcgtctcaaagtcatatttttgg 452
Query: 361 cagtaatgtcaaggcactgaagattgctcttttattgaaagataatatatttttgttcat 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cagtaatgtcatggcactgaagattgctcttttattgaaagataatatatttttgttcat 392
Query: 421 tttcctgcccttatatccactttttagacacataaaatggtgagtatattttcacatatt 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 391 tttcctgcccttatatccactttttagacacatagaatggtgagtatattttcacatatt 332
Query: 481 tatgcaagatctttatatcaggtgggaatattttcaaagtaattcttgatattatgtaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tatgcaagatctttatatcaggtgggaatattttcaaagtaattcttgatattatgtaaa 272
Query: 541 gagtgcatgatgatacagtgatttttggatacaatagctatctacctatccctcaaattc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gagtgcatgatgatacagtgatttttggatacaatagctatctacctatccctcaaattc 212
Query: 601 cttcttgcaag 611
|||||||||||
Sbjct: 211 cttcttgcaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
