Query= MSMg01no072_o21.b1 MSMg01no072_o21.b1 CHROMAT_FILE:
MSMg01no072_o21.b1 PHD_FILE: MSMg01no072_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:50 2005
(582 letters)
>mm_chr19_21866222_21867202
Length = 981
Score = 1046 bits (541), Expect = 0.0
Identities = 567/581 (97%), Gaps = 10/581 (1%)
Strand = Plus / Minus
Query: 2 ggaattcttcagtgccctgtcgcagcagctccacaccattagcacacttctccactccca 61
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ggaattcttcagtgccctg-agcagcagctccacaccattagcacacttctccactccca 516
Query: 62 cctcagcctgacactgacggaaaataccaagtcagttacatccccgattcagttaactgg 121
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 515 cctcagcctgacactgacagaaaataccaagtcaattacatccccgattcagttaactgg 456
Query: 122 gtgccgccaccttcagtgttaggttgtctagttctaaggacactgcctctccactccact 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gtgccgccaccttcagtgttaggttgtctagttctaaggacactgcctctccactccact 396
Query: 182 ccactgcagagcacataatcgcatcctacagcctcccagggctccctggctgcgctctag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccactgcagagcacataatcgcatcctacagcctcccagggctccctggctgcgctctag 336
Query: 242 aacaattcagttagggtggtgaggctgggtcaaagctgctggaaaattaacattcccaag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aacaattcagttagggtggtgaggctgggtcaaagctgctggaaaattaacattcccaag 276
Query: 302 ggactctaaagagcacctggagccacctgctcatgccaactgttcagggttttcagaatg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggactctaaagagcacctggagccacctgctcatgccaactgttcagggttttcagaatg 216
Query: 362 gaaaataagcattacaaaaaaaaaaaaaaaaaaaaaacaaacctgagagaaatggagatc 421
|||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaaaataagcatta---------aaaaaaaaaaaaaacaaacctgagagaaatggagatc 165
Query: 422 cctggactcttttttatgtgattcaggcccaactactgcaaagaggactctggatttaca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 cctggactcttttttatgtgattcaggcccaactactgcaaagaggactctggatttaca 105
Query: 482 tatttaaaacacacactttgaaaggaagaggcagatggcgtattacattataatctcaaa 541
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 104 tatttaaaacacacactttgaaaggaagaggcaaatggcgtattacattataatctcaaa 45
Query: 542 aagaaaagaaaaatgtgtgtctataaaacacactctggtga 582
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 aagaaaagaaaaatgtgtgtctataaaacacactctggtga 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 981
Length adjustment: 10
Effective length of query: 572
Effective length of database: 971
Effective search space: 555412
Effective search space used: 555412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_o21.g1 MSMg01no072_o21.g1 CHROMAT_FILE:
MSMg01no072_o21.g1 PHD_FILE: MSMg01no072_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:50 2005
(129 letters)
>mm_chr19_21701351_21701879
Length = 529
Score = 219 bits (113), Expect = 7e-62
Identities = 125/129 (96%)
Strand = Plus / Plus
Query: 1 acataacagtgtaaatggagcttagtaaactttattattaatatgacccagtcagcctcc 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acataacagtgtaaatggagtttagtaaactttattattaatatgacccagtcagcctcc 260
Query: 61 cactaaccaaggcagaattctgtggattatttgatcagttcttgtacagttattgggggt 120
||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||
Sbjct: 261 cactaaccaaggcagaattctgtcgattatttgatcagttcttgtatagttactgggggt 320
Query: 121 ggggagggg 129
|||||||||
Sbjct: 321 ggggagggg 329
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space: 63041
Effective search space used: 63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
