Query= MSMg01no073_p04.b1 MSMg01no073_p04.b1 CHROMAT_FILE:
MSMg01no073_p04.b1 PHD_FILE: MSMg01no073_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:10 2005
(316 letters)
>mm_chr19_47960938_47961653
Length = 716
Score = 578 bits (299), Expect = e-169
Identities = 308/311 (99%)
Strand = Plus / Minus
Query: 6 ggaattctttccagtcacaagaccctgggtgtctcccaggctcatggccaaagtttgaac 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ggaattctttccagtcacaagaccctgggtgtctcccaggctcatggccaaagtttgaac 292
Query: 66 aggaatgacacacacgccttcccatgggggcagcggcgtttctttgctaaaagaccatat 125
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 291 aggaatgacacacacgcctccccatgggggcagcggcgcttctttgctaaaagaccatat 232
Query: 126 ttcatcatagagtatgtgtggttggattctttctttcttttttttcttttttcctttcct 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ttcatcatagagtatgtgtggttggattctttctttcttttttttcttttttcctttcct 172
Query: 186 tccttctttcttcatctccttctctccctcctcctccctctcctcttccccctcccccct 245
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tccttctttcttcatctcctcctctccctcctcctccctctcctcttccccctcccccct 112
Query: 246 ctccatcttctcaagttttcttctcaccagagaaacttttgatgagttccaacctacagt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 ctccatcttctcaagttttcttctcaccagagaaacttttgatgagttccaacctacagt 52
Query: 306 gacaaacgtct 316
|||||||||||
Sbjct: 51 gacaaacgtct 41
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_p04.g1 MSMg01no073_p04.g1 CHROMAT_FILE:
MSMg01no073_p04.g1 PHD_FILE: MSMg01no073_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:10 2005
(469 letters)
>mm_chr19_47826542_47827409
Length = 868
Score = 733 bits (379), Expect = 0.0
Identities = 440/467 (94%), Gaps = 14/467 (2%)
Strand = Plus / Plus
Query: 1 actatgtagctcaggctggtctcagagatctgcctgacttgccttttcagtgctgggatt 60
||||||||||||||||| ||||||| |||| |||||||| ||||||||||||
Sbjct: 210 actatgtagctcaggctagtctcagggatc---------tgccttttgagtgctgggatt 260
Query: 61 aaaggtgtgcaccaccacacctggccatataaacggactcttaaagagag--acatacgt 118
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 261 aaaggtgtgcaccaccacacctggccatataaacggactcttaaagagagtaacatatgt 320
Query: 119 cgtttatgatgtagtaaatgtgttggtaatgtgcttagttaacactatcaatgtaggttg 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tgtttatgatgtagtaaatgtgttggtaatgtgcttagttaacactatcaatgtagggtg 380
Query: 179 acacccattgaaacacgcattgataattagcattgatccccattatctctttaacaaatc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacccattgaaacacgcattgataattagcattgatccccattatctctttaacaaatc 440
Query: 239 tgatctattcacgtttatactatgattgtgaatatgaacattctcattctaagtttatca 298
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 441 tgatctattcacgtttatactatgatcgtgaatatgaacattctcattctaagtttatta 500
Query: 299 tttctatgttcagtgacacttggaccacatggctccaagtagagggtgactttccccgga 358
||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 501 tttctatattcagtgacacttggaccacatggc-cca--tagagggtgactttccccgga 557
Query: 359 gaatgtccagcaagcagcttcaaaggttgcatgtcttgatcaaggcctatagccagtcca 418
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct: 558 gaatgtccagcaagcagcttcaaaggttgcatgtcttgatcaaggtctacagccggtcca 617
Query: 419 tgattaatcactgtattttgagaggggtgtgtgtgtgtgtgtgtgtg 465
||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 618 tgattaatcactgtattttgagaggggtgtgtgtgtgtgcgtgtgtg 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 868
Length adjustment: 10
Effective length of query: 459
Effective length of database: 858
Effective search space: 393822
Effective search space used: 393822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
