BAC Information

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BAC

Clone NameMSMg01-075D21
Chromosome19 (Build37)
Map Location 13,792,565 - 13,793,138
singlet/doubletsinglet
Overlap geneOlfr1492-ps1
Upstream geneKeg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491
Downstream geneOlfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505, EG667433, Tle4
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075D21.T7 (MSMg01no075_d21.b1)MSMg01-075D21.TJ (MSMg01no075_d21.g1)
ACCAG298107AG298108
length719673
length of high quality
(start - end)
144 (69 - 212)576 (77 - 652)
definitionCHROMAT_FILE: MSMg01no075_d21.b1 PHD_FILE: MSMg01no075_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:51 2005CHROMAT_FILE: MSMg01no075_d21.g1 PHD_FILE: MSMg01no075_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATATTTGCGGCGCTAAACGACTCCTACATACCGAGGNTCCGCGGAATTC
TCAACTGTGCCATAATGGATGGCTGAAAAGCACCTAAAGAAATGTTCAAC
ATATTTAGTCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCTACC
TCACTCCAGTCAGAATGGCTAAGATCCAAACCTCAGGTGACAGCTGATGC
TGGCAATGAGGTGGATAAAGAGTACCACTCCTCAATTGTTGCTTGTTTTG
CCAGCTTGTATAATCCCTCTTGAATATCTTTCTGCCAGTTCCTTTCACAA
TCATGGACATAGTATTTTTTTTTCACCCAGTGATTATATTTCCTTGCTTT
TTTTCCCTTTTTATGTTCCCCTACTTTCTTATGTAACTATGTTCTTAATA
TTTTTGATTGTTTAAACTCCCCCCCGTTTTTTATGTTTAATTTATTTTTT
TTGTTTATTCACATATATATATGTTATATTTAAAATTTTTTATGTTTTCC
AGAATTTTGATTATTATTAGCTCTGATATTTGTTCTTTTTAACTTTTTAG
ATAGTTATGTTTATTTGTTTTATGATGCTATTTTTCTGTTTTTTCTTTTT
CCTCTATCTTTGTTACATTTGTATGAATGATTATAAGTAATTGGTGTTGT
ATTGCTGATTGAGTGTATTCATATATATTGTGTTTATTTTCTCTTTTTGT
AGTTTTCTGGCCGTTTGTT
NNCCGATGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAATGACCATGCTGGTGATCA
GGTAGGAAGTCATAATTACCAACATCCAAGCAGGAGTGATGGAAATGGCA
GATAGCAATGATCAATTCCTTGGAGGAGCTTTCCCCATCTGACAGCTTTA
ACTGACTACATTTACTGGGAGACCACAGAAAATGAAGCAGTCTTATGGTT
TCTACAAAATGAGAGAGTGAGTGATGACATTATTCACATCAAACCATGGA
GGAGGCCAGCAACATAATTCCCAGCTACAAACCCCAGAAAGGCTTTCTGC
ATCATGGTGGTTTCATAGAGGAGAGGTCAGAATATAGCATTCCTAGGCCA
TGAGGTCCAAGATGTAGCAATCACCGCCAGCCAAAGAAAGTAAACAGGAA
AATCTGACCAAAGCTTGGTACACAGGATAAAAGAAGCTGTCCCTTGGTCC
AACAACATGGACATGGTTTGAGGAACAATGATAAAGAACATATTTCCATG
AAAGAGTGGAACCTGCAATCCATGTGAATCATTGTAATCATGGCCAAATT
TACTGGCAAAGTGAAGATAAACAGAAGGAAAAGAGGAAGTGTCTGATCTG
AGTGTTCTGTACAAGCTATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_d21.g1 MSMg01no075_d21.g1 CHROMAT_FILE:
MSMg01no075_d21.g1 PHD_FILE: MSMg01no075_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:52 2005
         (576 letters)



>mm_chr19_13792365_13793338
          Length = 974

 Score = 1027 bits (531), Expect = 0.0
 Identities = 565/577 (97%), Gaps = 4/577 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagaatgaccatgctggtgatcaggtaggaagtcataattaccaacatccaagcaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tcagaatgaccatgctggtgatcaggtaggaagtcataattaccaacatccaagcaggag 715

                                                                       
Query: 61  tgatggaaatggcagatagcaatgatcaattccttggaggagctttccccatctgacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tgatggaaatggcagatagcaatgatcaattccttggaggagctttccccatctgacagc 655

                                                                       
Query: 121 tttaactgactacatttactgggagaccacagaaaatgaag-cagtcttatggtttctac 179
           |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 654 tttaactgactacattcactgggagaccacagaaaatgaagccagtcttatggtttctac 595

                                                                       
Query: 180 aaaatgagagagtgagtgatgacattattcacatcaaaccatggaggaggccagcaacat 239
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaaatgagagagt--gtgatgacattattcacatcaaaccatggaggaggccagcaacat 537

                                                                       
Query: 240 aattcccagctacaaaccccagaaaggctttctgcatcatggtggtttcatagaggagag 299
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 aatccccagctacaaaccccagaaaggctttctgcatcatggtggtttcatagaggagag 477

                                                                       
Query: 300 gtcagaatatagcattcctaggccatgaggtccaagatgtagcaatcaccgccagccaaa 359
           ||||||||||||||||||||||||||||||||||||| ||||||||||  |  |||||||
Sbjct: 476 gtcagaatatagcattcctaggccatgaggtccaagaggtagcaatcagtg-gagccaaa 418

                                                                       
Query: 360 gaaagtaaacaggaaaatctgaccaaagcttggtacacaggataaaagaagctgtccctt 419
           ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 417 gaaagtaaacaggaatatctgaccaacgcttggtacacaggataaaagaagctgtccctt 358

                                                                       
Query: 420 ggtccaacaacatggacatggtttgaggaacaatgataaagaacatatttccatgaaaga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ggtccaacaacatggacatggtttgaggaacaatgataaagaacatatttccatgaaaga 298

                                                                       
Query: 480 gtggaacctgcaatccatgtgaatcattgtaatcatggccaaatttactggcaaagtgaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gtggaacctgcaatccatgtgaatcattgtaatcatggccaaatttactggcaaagtgaa 238

                                                
Query: 540 gataaacagaaggaaaagaggaagtgtctgatctgag 576
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 gataaacagaaggaaaagaggaagtgtctgatctgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 974
Length adjustment: 10
Effective length of query: 566
Effective length of database: 964
Effective search space:   545624
Effective search space used:   545624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)