Query= MSMg01no075_i19.b1 MSMg01no075_i19.b1 CHROMAT_FILE:
MSMg01no075_i19.b1 PHD_FILE: MSMg01no075_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:14 2005
(586 letters)
>mm_chr19_53176531_53177515
Length = 985
Score = 1085 bits (561), Expect = 0.0
Identities = 578/584 (98%), Gaps = 1/584 (0%)
Strand = Plus / Plus
Query: 3 ggaattccaggcttccaggccatcttgcctgtgacatgataccaccctaatttgcctctc 62
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 203 ggaattccaggcttccaggccatcttgcctgtgacacgataccaccctaatttgcctctc 262
Query: 63 tggctcaagttcagtagaataattgtgtgagccctaggcactgtcccgccccatccatcc 122
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 263 tggctcaagttcagtagaataattgtgtgagccctaggcactgtcc-gccccatccatcc 321
Query: 123 atggtggactttaacttgacagattttcttctccgataatacattaaggaaaatggatcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atggtggactttaacttgacagattttcttctccgataatacattaaggaaaatggatcc 381
Query: 183 taagggactttataggttacacatattttaggactaaaaaaggaatccacaagaatttca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 taagggactttataggttacacatattttaggactaaaaaaggaatccacaagaatttca 441
Query: 243 gcccacaggttgtctaaatgtcactgccctagagcctctaaaatggccttactcatctta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gcccacaggttgtctaaatgtcactgccctagagcctctaaaatggccttactcatctta 501
Query: 303 ttcgtgtctcagtcatctgtaagctggcttacaggataacattcatagatttgtggtcta 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttcgtgtctcagtcatctgtaagctggcttacaggataacattcatagatttgtggtcta 561
Query: 363 atcggagcctcattttcccagatgtgtgtgtcagtttatcttagatttgttcatgatgaa 422
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atcagagcctcattttcccagatgtgtgtgtcagtttatcttagatttgttcatgatgaa 621
Query: 423 actatgatccttaaaggtcctgttgctctcaggacaagccctcanatacacgaccccaca 482
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 622 actatgatccttaaaggttctgttgctctcaggacaagccctcaaatacacgaccccaca 681
Query: 483 ggggtctgatccaggcctcacagaagaaactccttatactcccagggacttgatggcaat 542
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 682 ggggtctgatccaggcctcacagaagaaactccttatactcccacggacttgatggcaat 741
Query: 543 aatcagtcaacaacaacatgtggacagagagacagagggtagac 586
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aatcagtcaacaacaacatgtggacagagagacagagggtagac 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space: 561600
Effective search space used: 561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no075_i19.g1 MSMg01no075_i19.g1 CHROMAT_FILE:
MSMg01no075_i19.g1 PHD_FILE: MSMg01no075_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:14 2005
(647 letters)
>mm_chr19_53290229_53291275
Length = 1047
Score = 1251 bits (647), Expect = 0.0
Identities = 647/647 (100%)
Strand = Plus / Minus
Query: 1 actctacaggagccaagtacaacttttaaactctagcaaacaaactttcttttaaaagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 actctacaggagccaagtacaacttttaaactctagcaaacaaactttcttttaaaagca 951
Query: 61 gcttcgggactggagagatggctcagtggttgagaacactggctgcgcttgtagaggagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 gcttcgggactggagagatggctcagtggttgagaacactggctgcgcttgtagaggagc 891
Query: 121 tgggctcaattcttagaacccacacagaggttctcaactgtctgttacttcggtcccaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 tgggctcaattcttagaacccacacagaggttctcaactgtctgttacttcggtcccaga 831
Query: 181 ggagcctctttggcctctgtaccaggcacagatgtggtgcatacatgcaggcaaaacacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ggagcctctttggcctctgtaccaggcacagatgtggtgcatacatgcaggcaaaacacc 771
Query: 241 catatacataaaattaaagtaaaatctaaaaaaaaagaagaagaaatgaaaaagcagcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 catatacataaaattaaagtaaaatctaaaaaaaaagaagaagaaatgaaaaagcagcat 711
Query: 301 catggagaaaggtcgcttgatggagcccaagggttggagagaattgccctagtgcactcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 catggagaaaggtcgcttgatggagcccaagggttggagagaattgccctagtgcactcg 651
Query: 361 tggccctgggcgtgactccctcccagctcttagaaaatttaagaaggcagcttctccaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tggccctgggcgtgactccctcccagctcttagaaaatttaagaaggcagcttctccaaa 591
Query: 421 catattagaaaagttttttatgtagaaaaacattttttaacaaccacaaaagaaaataaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 catattagaaaagttttttatgtagaaaaacattttttaacaaccacaaaagaaaataaa 531
Query: 481 acttagattataatgctgttagaaattactattttcagagctaatgaaaattcatgtcta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 acttagattataatgctgttagaaattactattttcagagctaatgaaaattcatgtcta 471
Query: 541 aatactgaattttttaaacaaaatatataatgttacttattttaaattaatttaagggac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aatactgaattttttaaacaaaatatataatgttacttattttaaattaatttaagggac 411
Query: 601 tggagaaatagcgcagtgattaagaacaggtattgctcttgcagagg 647
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tggagaaatagcgcagtgattaagaacaggtattgctcttgcagagg 364
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
