BAC Information

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BAC

Clone NameMSMg01-075L21
Chromosome19 (Build37)
Map Location 56,840,159 - 56,840,754
singlet/doubletsinglet
Overlap genenone
Upstream geneTcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643
Downstream geneA630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540, Trub1, LOC100043038, Atrnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075L21.T7 (MSMg01no075_l21.b1)MSMg01-075L21.TJ (MSMg01no075_l21.g1)
ACCAG298486AG298487
length659672
length of high quality
(start - end)
294 (67 - 360)596 (77 - 672)
definitionCHROMAT_FILE: MSMg01no075_l21.b1 PHD_FILE: MSMg01no075_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:29 2005CHROMAT_FILE: MSMg01no075_l21.g1 PHD_FILE: MSMg01no075_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATTTGCGGCGCTATACGACTCCTATTTTCAGAAATCCGCGGAATTCAG
GCAGATTCCCAGATCCTAGATCTCGATAGGGGATGCCATTGGAATCCAGA
GTCACCTTTTCTTTCCCATAATATGTTCTAAAGGATGGCTAGATGAATGT
GTTGATGTATAGACAATGGATACATGAGTGGGCAGATGCACGGATGCATG
GATCCATGGATGCATGGATAGTTGGATACATCGTGTATGGATGCATGGGT
CAGTGGATATGCGCATGCACACATGAATGGACACATGGGCTAGTGGATGC
ATACATGCACACTTAGATTGATGCATGGGGCAGTGTATACATGCATGCAC
ACATGGATGGGTGTATGGGTAGAAAGTAGACTGATTTTTTTTTAACATGG
TTTTTGTCGGCCCCACCCACAGCAGTGAGGCTGGAGACTAGAACCACACT
TGCAGGTAAGTACGAATATGAACTAGACTTGGAAGAAGATGAAGTGTGCA
CTAAATCATTCACAATTTGTGCTGAGCTGAGCTTATGGAGTCTTTAATAT
ACAATGCATAGTTTCCTCTGGCTGGTTGTAAGAGAATTTGAAATACAGAG
TCTATTCTATGAGTCTATCTCAGTTCCAAGTATGTGAGTTGACTCTGTAC
TTGCTTAAT
NNNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTGTTCCTGAATCATAGAAGGG
TGAGGTCAAGTGAAGGAACAAGAAAGATGACGTCTCAGGTGGAGGACACC
TACCTACCACTCAGCACTGTCAGCCGAGTTCACGACCTTCACAGCTTCAG
TGCAGGCAGGTAACTAACTCTTCCTGGTCTCTGAAGTGAAAACTTTAAGG
TTCTTTGGAAAGTCAGCTGTGTTGGATGGACAAACGCATGAAGGAGTATT
TTCCTGAAGTCCACACAAGTGAAAGACTAAGGCAGACTTGTGAAGGAATG
TTTCACTGAAGCAGACACAAGAGAGAGGATGTTCTGCTAAAGAAAAGATG
TGAAAGGAAGAAGAACAAAGACCACAACATGGACACTTTGCCCCTTCTTA
GAATTGGGAACAATCACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAG
CTGAGACAAAAGGATGGACCATCTAGAGACTGCCTTATCTAGAGATCTAC
CCCATAATCAGCTTCCAAACGCTGACACCATTGCATACACTAGCAAAAGT
TTGCTGAAAGGACCCTGATATAACTGTCTCTTGTGAGACTAGGCCGGGGC
CTGGCAAATACAGAAGTGGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_l21.g1 MSMg01no075_l21.g1 CHROMAT_FILE:
MSMg01no075_l21.g1 PHD_FILE: MSMg01no075_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:29 2005
         (596 letters)



>mm_chr19_56839959_56840954
          Length = 996

 Score = 1122 bits (580), Expect = 0.0
 Identities = 592/596 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgttcctgaatcatagaagggtgaggtcaagtgaaggaacaagaaagatgacgtctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgttcctgaatcatagaagggtgaggtcaagtgaaggaacaagaaagatgacgtctc 260

                                                                       
Query: 61  aggtggaggacacctacctaccactcagcactgtcagccgagttcacgaccttcacagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtggaggacacctacctaccactcagcactgtcagccgagttcacgaccttcacagct 320

                                                                       
Query: 121 tcagtgcaggcaggtaactaactcttcctggtctctgaagtgaaaactttaaggttcttt 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagtgcaggcagataactaactcttcctggtctctgaagtgaaaactttaaggttcttt 380

                                                                       
Query: 181 ggaaagtcagctgtgttggatggacaaacgcatgaaggagtattttcctgaagtccacac 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ggaaagtcagctgtgttggatggacaaatgcatgaaggagtattttcctgaagtccacac 440

                                                                       
Query: 241 aagtgaaagactaaggcagacttgtgaaggaatgtttcactgaagcagacacaagagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtgaaagactaaggcagacttgtgaaggaatgtttcactgaagcagacacaagagaga 500

                                                                       
Query: 301 ggatgttctgctaaagaaaagatgtgaaaggaagaagaacaaagaccacaacatggacac 360
           |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 501 ggatgttctgctaaagaaaagatgtgaaaggaagaagaacaaagaccaaaatatggacac 560

                                                                       
Query: 361 tttgccccttcttagaattgggaacaatcacccatggaaggagttacagagacaaagttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgccccttcttagaattgggaacaatcacccatggaaggagttacagagacaaagttt 620

                                                                       
Query: 421 ggagctgagacaaaaggatggaccatctagagactgccttatctagagatctaccccata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggagctgagacaaaaggatggaccatctagagactgccttatctagagatctaccccata 680

                                                                       
Query: 481 atcagcttccaaacgctgacaccattgcatacactagcaaaagtttgctgaaaggaccct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcagcttccaaacgctgacaccattgcatacactagcaaaagtttgctgaaaggaccct 740

                                                                   
Query: 541 gatataactgtctcttgtgagactaggccggggcctggcaaatacagaagtggatg 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatataactgtctcttgtgagactaggccggggcctggcaaatacagaagtggatg 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)