BAC Information

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BAC

Clone NameMSMg01-076N17
Chromosome19 (Build37)
Map Location 16,479,428 - 16,479,833
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438
Downstream geneGna14, LOC666665, Vps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076N17.T7 (MSMg01no076_n17.b1)MSMg01-076N17.TJ (MSMg01no076_n17.g1)
ACCAG299334AG299335
length714700
length of high quality
(start - end)
409 (39 - 447)210 (55 - 264)
definitionCHROMAT_FILE: MSMg01no076_n17.b1 PHD_FILE: MSMg01no076_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:59 2005CHROMAT_FILE: MSMg01no076_n17.g1 PHD_FILE: MSMg01no076_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
TCACTGTCCTCCTCAAACGACTTTCCCTCCCCAGAAGAGCATTGGGCTTG
TATTCTTACAGTTGTTTATTTACATTACAAACACCATTTATTCAACTCAT
ACGAACATGGAATCTCAGCACAAAATCAGTATGGCTTCTTTTAAATATTG
GCAGTGTTTTCAAGAAATCATGCCGACATGGAAATATTCTGGGGAATAAA
GAAAGAGACATTAATGTGATTGGACCTGGAAGGATTCAGTATATGAAATA
CATAAAGACCATCAATTAATGGGCAGAAAGACTAAGATATCAAATATATC
AAGCTGGAGACTGGAGAGATGGCAACAGCATGTAGCCCCCAGTTTTTTTT
GTTTTTGTTTTTGTTTTTTTTCCTTGAACAGGGTTTCACTATGTAGCCTT
GGCTGGCCAAAACCTTACTATGTAGATCAAGCTGGCTCCAAACTCACACA
GATTTCCCCCTATCTCTGTATCCTCAGTACTGGGAATAGAAAGATGTGCC
TGGTCCAACACGAGACTTTCTGTGACTGCTGTTACAGCTTGCTCTCTGTT
TAAGTTTTAGGAAGACAGTACCAAATTACTACCGAAAGGATCCTGTTTGT
TTATCTCTCTGGTTTCCTTAAAAAGGATCTAACTCAGGGCTGGCGGAAAA
GGTTCAGTGGCGCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCTCCTAGTTTGCTTTCCGTTGCTGTGATAAAATATTCTGAATAAA
AGCAACTTGGGGGAGGAGAGGGAAGTCTGGGCAGGAACTCAAAGCAAGAG
CCCGGAGGTAGGAACTGAAGCAGAAACTGTGGAGAGCTACTTCTTACTGG
CTTGTTCCTCACGGCTCTCTTAGCTTGCTATTTCGTTAGTCAATCAGGAC
CATCTGCCCACAGTGGACTGGGCCTTTCCACATCAATCAATCACTAATTA
GTGATCACTCTGCCAATCTCTAGACTTGCCTGTTGGCCATCGTATGAAGG
CACTTTCTCACCTCCAAATTGCCTTTCATCAGCCATGATGGAATTTGTCT
AGCCCGTTATTCTGCATTGATGACGGGTGCAGGGGCTACACACATGCTCT
CAAGAAATATTCTACTATTGTACCGATTTCCAGCATTCTGCCCGCACGCA
CGAGTTGCACTATCTACCCCTATATATCTGGACTATATGTGATCCTTAAC
CTAACAAGCCAGTCCTCCCGAATGACCCTTAGCTCTGATATTCCCTGCTT
CCGCCTACTCTTGTTTCCGCTCCTTCTCGAAGCACCATGTATACTCTACC
TATTCCCATTACCACCCCCGCCCCTATTGAACATTCAATTATCTTACAGT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_n17.b1 MSMg01no076_n17.b1 CHROMAT_FILE:
MSMg01no076_n17.b1 PHD_FILE: MSMg01no076_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:59 2005
         (409 letters)



>mm_chr19_16479224_16480033
          Length = 810

 Score =  748 bits (387), Expect = 0.0
 Identities = 402/407 (98%), Gaps = 3/407 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttcactgtc-ctcctcaaacgactttccctccccagaagagcattgggcttgt 63
           ||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttcactgtcaatcctcaaatgactttccctccccagaagagcattgggcttgt 264

                                                                       
Query: 64  attcttacagttgtttatttacattacaaacaccatttattcaactcatacgaacatgga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attcttacagttgtttatttacattacaaacaccatttattcaactcatacgaacatgga 324

                                                                       
Query: 124 atctcagcacaaaatcagtatggcttcttttaaatattggcagtgttttcaagaaatcat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atctcagcacaaaatcagtatggcttcttttaaatattggcagtgttttcaagaaatcat 384

                                                                       
Query: 184 gccgacatggaaatattctggggaataaagaaagagacattaatgtgattggacctggaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccgacatggaaatattctggggaataaagaaagagacattaatgtgattggacctggaa 444

                                                                       
Query: 244 ggattcagtatatgaaatacataaagaccatcaattaatgggcagaaagactaagatatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggattcagtatatgaaatacataaagaccatcaattaatgggcagaaagactaagatatc 504

                                                                       
Query: 304 aaatatatcaagctggagactggagagatggcaacagcatgtagcccccagtttttttt- 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 505 aaatatatcaagctggagactggagagatggcaacagcatgtagcccccagttttttttt 564

                                                          
Query: 363 gtttttgtttttgttttttttccttgaacagggtttcactatgtagc 409
           |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 565 gtttttgtttttgttttttt-ccttgaacagggtttcactatgtagc 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 810
Length adjustment: 9
Effective length of query: 400
Effective length of database: 801
Effective search space:   320400
Effective search space used:   320400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)