BAC Information

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BAC

Clone NameMSMg01-078C06
Chromosome19 (Build37)
Map Location 60,999,490 - 60,999,952
singlet/doubletsinglet
Overlap geneGprk5
Upstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3
Downstream geneLOC671322, BC029127, LOC100043112, EG547091, LOC433261, EG633057, Csf2ra, LOC100043120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078C06.T7 (MSMg01no078_c06.b1)MSMg01-078C06.TJ (MSMg01no078_c06.g1)
ACCAG299547AG299548
length726774
length of high quality
(start - end)
466 (43 - 508)220 (68 - 287)
definitionCHROMAT_FILE: MSMg01no078_c06.b1 PHD_FILE: MSMg01no078_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:22 2005CHROMAT_FILE: MSMg01no078_c06.g1 PHD_FILE: MSMg01no078_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTTAGACTCACCAGAATCAGCACTCTGCTCTCCTATCTTCTTCCTAG
AAGGACACAAACATCCATTTGTAAAGCCCTCTCTTCTCTTTTGAAACAAG
GAACCAGTCGACATTGAATATGTAATGTAACTGGTTTATTAGACAGCCCT
TAAATACCTACCATGAATTTCCTCTAATTTGCTTTCATTAATTTCCCTTA
ATTTTCTTCCTAGAAGCCCCAAACTCTTCCTTTACTTAGCCTAAGATGGT
ATATAGCTCCAAAATCTAAGTGACATCTTTGAACTGTGTTTCTTTGTGCG
CTGCTATGCCTAAATGTGACTTAAATGAAAATCTCCCATCCGAAGCTAAG
AATTGCTCTTTCCAGATCTGTAAAGAATTGTATTGGAATTTTGATAGGAA
TGTCATTGAATCTATAGATTCAATGCTTTTGGACATTTTCACCATGTCAA
TCCTGCCAATCCATGAGCATGGGATACCTTTCCATCTTTCTGATATCTTC
GATTTCTCGCTGCATCTTAAAGTTCTTGTCATTCAGGCCTTCCACCTGCC
CTGTTTAGAAATACCCCAAGACGTTTTATATTATTTTGTGCTTATTGTTG
ATTAGCGCTTATTCCCCCCGCATCTTTTTCTTATATATCCTCCTTAATTT
ATTTTTACCCATCCCTTATCACCTAC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATGACAGCCAGGACTACACAAAGAAACCTTGT
CTTGAAAAACAAAACAAAACAAAACAAAACAACAACAACAACAAAAAAAA
ACACCAAAAAATGGAAAAGAAGAGAAGAAGAGAAAAGAAAAGGAAAGAAA
AGAGGCCTGTAGATGTGCATAGATAGACCAGAGCATCTAAGCCTCTACTT
AACATTTGTTTGGTGTATATGTTTATGTATGTGGGTTGCCCCCCCCNTTT
TCTTTTTTTTTTTCCCCTCTTCCCCCCCCCTCCCCTCTTTTCCTCCTCTC
TTCCCCTTTTTTTCCCCCCCCTTCCCTTTTTTCCTTCCCGTTTCTCCCCC
CCTCTCTTTTCGCCCCCCCTTTTTCCTTTTCTCTTTTTTTTCCTCCTTCT
CTTCCCCCCTTCCCCCTTTTTTTTTCTCCCTCTCTCTTTCCCCCCCCCCC
TCCCTCTCCTTTTTTTCTTCTCCACTCTTTTCTCCCTCCTTCTCTCTCCT
CTTTCTTCCCTCTTATATTATTCTCAATCCTTTACCCCTCTTTCTTATTC
TTTCTCCTATCACACCCCTCCCTTTCTTCTTCCATCCTTCACTCTTCTTT
CCCTTCACCCCCTGCCTCTTTTTCGATCTTTCCCCCCTCTTTATTTTCTT
CCCCTCCACCCCTCTTTTTCTTCTTCTATTCTCCTTTCTCTCCTCCCTTC
TCTCCCTTTCCTTATCCTCTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_c06.b1 MSMg01no078_c06.b1 CHROMAT_FILE:
MSMg01no078_c06.b1 PHD_FILE: MSMg01no078_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:22 2005
         (466 letters)



>mm_chr19_60999413_61000279
          Length = 867

 Score =  864 bits (447), Expect = 0.0
 Identities = 459/463 (99%), Gaps = 1/463 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttagactcaccag-aatcagcactctgctctcctatcttcttcctagaagga 63
           ||||||||||||||| |  || ||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gaattcttttagacttaaaagtaatcagcactctgctctcctatcttcttcctagaagga 481

                                                                       
Query: 64  cacaaacatccatttgtaaagccctctcttctcttttgaaacaaggaaccagtcgacatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cacaaacatccatttgtaaagccctctcttctcttttgaaacaaggaaccagtcgacatt 421

                                                                       
Query: 124 gaatatgtaatgtaactggtttattagacagcccttaaatacctaccatgaatttcctct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gaatatgtaatgtaactggtttattagacagcccttaaatacctaccatgaatttcctct 361

                                                                       
Query: 184 aatttgctttcattaatttcccttaattttcttcctagaagccccaaactcttcctttac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aatttgctttcattaatttcccttaattttcttcctagaagccccaaactcttcctttac 301

                                                                       
Query: 244 ttagcctaagatggtatatagctccaaaatctaagtgacatctttgaactgtgtttcttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttagcctaagatggtatatagctccaaaatctaagtgacatctttgaactgtgtttcttt 241

                                                                       
Query: 304 gtgcgctgctatgcctaaatgtgacttaaatgaaaatctcccatccgaagctaagaattg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtgcgctgctatgcctaaatgtgacttaaatgaaaatctcccatccgaagctaagaattg 181

                                                                       
Query: 364 ctctttccagatctgtaaagaattgtattggaattttgataggaatgtcattgaatctat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ctctttccagatctgtaaagaattgtattggaattttgataggaatgtcattgaatctat 121

                                                      
Query: 424 agattcaatgcttttggacattttcaccatgtcaatcctgcca 466
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 agattcaatgcttttggacattttcaccatgtcaatcctgcca 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 867
Length adjustment: 10
Effective length of query: 456
Effective length of database: 857
Effective search space:   390792
Effective search space used:   390792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)