BAC Information

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BAC

Clone NameMSMg01-078J05
Chromosome19 (Build37)
Map Location 19,830,948 - 19,831,449
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpm6, Rorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078J05.T7 (MSMg01no078_j05.b1)MSMg01-078J05.TJ (MSMg01no078_j05.g1)
ACCAG299878AG299879
length1,567673
length of high quality
(start - end)
---503 (75 - 577)
definitionCHROMAT_FILE: MSMg01no078_j05.b1 PHD_FILE: MSMg01no078_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:56 2005CHROMAT_FILE: MSMg01no078_j05.g1 PHD_FILE: MSMg01no078_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTGTTTTNAATTGATGTGNNTGTGTTGGTGTGTGTGTTGGATAGG
GGGAGACGTGTGATTGAGGGTTTGCTAGTAANAGAGGAGTATGGTGGTNA
TGTGTAGTTGGGCGGTNTATNGGGGTATGCTATGTATTGATTGTATATNA
CACTATGATGTTAGAGGAGACGTAGAAGTAGTGAATGATCTGAGTGTGTG
TGATATGATAGTGAGGATATGACGCCTANCACAGTAATATATGACGACTA
TCGTTGTATACGTGTCGTTNATCTGTGCTCTNCGCCGCGACTCNGNCGCG
AGAGCCGCGCTCATGACGGGACGTGCACAAATACTTGAGAANNCGGAGTC
GCAGGCGCGATTATATGTGTAAGCGTGTGACAGGTGGAGCGCGTGCTGTC
GCGTGATCGCAACGCGGCGTCGTGTATAGTATAGACAGTACACGTAGCTA
CGTACAAACCCGCTGCTGCGCCGCGTCTGTCATCGTCGNTGCAATNGTTG
ATGAGTTATCGCNGATGACGCGTNCCGNTATNACTCCGCACGCTGCGCGC
ACACGATCNCACCGTCGCGCGTCGACGCAGCCAACGCGTTTGAATTACGC
GAGTCATCGTAGCGNATTCGATCTTAANTATTACGACGCAGTGAAGTCTA
TATCAGCACGACTACACGCAGAGTAGCACAGNAGCACAGGGTACGTGTAT
TGATGGTGAGTTCAGTAGAGTACACGTATTCACGTTATATANGCCACGNC
GCCTCGACTCACATAATCTATATGATACNGTACTCNCAGTCTCGCGCGTG
CTCTCTATCATACCTCCGACGNCTATGTGTCTNCGACGTAATAGTGATCG
CGCATACATGTATCGTGTATAAGAGAGCGAGAGGGTGATGTATAGCGACA
TCAGTATAGAATAGTCACTCAGACAGACTACTCCGTCATATAACATTACT
CTGTACGCACATCATAAGCATGTGTAGTACATCAGATNCTATATGTGCGT
GTGATGCGGATNGTGACGCGTNATTACAGCGAGCGGAGCGACGCACGCAC
TATTGAGATACATCAGTTGATATAGGTATCATACCCGTTATCGAACGTAG
CGCGCGCATGGATAGTAGATCGCAGCGTGTAGATGAAGTAGATCAGTATG
TAGTATGTCTACAGACGTGTCTCGTACTGTGTGTGCTNAGATTCTATACG
TAACGCAGATTACGATGATCATTGTTATATNTCAGCGCATAGTGTGATTT
GCTGTCGCATTGTCAGACTTGCTCACAGTATACGAGTACTCGNCGCCGTG
AGTAATGTGATGTAATAATNCGTTATGCGATGTGTGATGCGTATGNANGA
GATCGCTACACTCTATCTCGTGTACTGTACTTCGTTGGTGATCATGCACN
GCACTCCTCACGTACGTGTGATGTGTATCGATATCGNTGGGTCGCTGTAT
TAGTTATCGCTGATAGTCTGACTGAANTGANACGCTATCTGACGTAGTAT
AATCCAGACGATCTGACATGATGGATATTGCATCGCGCACACACNANCTA
CATGCTGGTGCCGTGAG
NACAATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTAGGATTGGTAACAAGTGCCCTTA
TGAACTGGGTCATCTCTGACATGAAATTAGCTTTTAAAGTCAATGTCCAT
TTTAAATTAGAACATTATAAATAAATAATAATGATAATAATTTCTGTCTG
AAAAAGTTCAGTGAAAGTTAACAAGCATACCAAATACTCTAAGCTATCTT
TTTAGTATTGCATATACACAAATAGTTACCTGTCTTGTTCAAGTTAATTT
ATTTAAATGACTTAGAATGGGTCTATCTTATTTCATCAGTGTTGCCATAC
AAATAAATCAGTCACCGAAGATTTTGAAAAAAAAAAGTCTTTAATATCTT
CATCACTAATGCCACTTCCAACATTCTTATTTTGTAGCCAGGGATGAACA
AAATAACTTTAAATATATTTGAAGAGGTAGAAAGGAGAGCTCAGCAGATT
AGTATATTTGAATATTCAGTGCATAACCTTTATAGCACTTTTCTACACCT
TGCAATCATTCTGTTCTGTGTGAATAAAAAGAAAAACCAATCTAGTTGCT
TTTGCAGTTGATCAAACAGCACAGAAGTATGCACTAAACAAGCAGAACCA
AACAAGTTCATCTGCCCTGCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_j05.g1 MSMg01no078_j05.g1 CHROMAT_FILE:
MSMg01no078_j05.g1 PHD_FILE: MSMg01no078_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:56 2005
         (503 letters)



>mm_chr19_19830629_19831532
          Length = 904

 Score =  917 bits (474), Expect = 0.0
 Identities = 495/502 (98%), Gaps = 1/502 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaggattggtaacaagtgcccttatgaactgggtcatctctgacatgaaattagcttt 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 attaggattggtagcaagtgcccttatgaactgggtcatctctgacatgaaattagcttt 762

                                                                       
Query: 61  taaagtcaatgtccattttaaattagaacattataaataaataataatgataataatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 taaagtcaatgtccattttaaattagaacattataaataaataataatgataataatttc 702

                                                                       
Query: 121 tgtctgaaaaagttcagtgaaagttaac-aagcataccaaatactctaagctatcttttt 179
           ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 701 tgtctgaaaaagttcagtgaaagtttactaagcataccaaatactctaagctatcttttt 642

                                                                       
Query: 180 agtattgcatatacacaaatagttacctgtcttgttcaagttaatttatttaaatgactt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 agtattgcatatacacaaatagttacctgtcttgttcaagttaatttatttaaatgactt 582

                                                                       
Query: 240 agaatgggtctatcttatttcatcagtgttgccatacaaataaatcagtcaccgaagatt 299
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 581 agaatgggtctatcttatttcatcagtgttgccgtacaaataaatcagtcaccgaagatt 522

                                                                       
Query: 300 ttgaaaaaaaaaagtctttaatatcttcatcactaatgccacttccaacattcttatttt 359
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttgaaaaaaaaatgtctttaatatcttcatcactaatgccacttccaacattcttatttt 462

                                                                       
Query: 360 gtagccagggatgaacaaaataactttaaatatatttgaagaggtagaaaggagagctca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 461 gtagccagggatgaacaaaataactttaaatatatttgaagaggtagaaaggagagctct 402

                                                                       
Query: 420 gcagattagtatatttgaatattcagtgcataacctttatagcacttttctacaccttgc 479
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 401 gcagattagtatatttgaatatccagtgcataacctttatagcacttttctacaccttgc 342

                                 
Query: 480 aatcattctgttctgtgtgaat 501
           ||||||||||||||||||||||
Sbjct: 341 aatcattctgttctgtgtgaat 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 904
Length adjustment: 10
Effective length of query: 493
Effective length of database: 894
Effective search space:   440742
Effective search space used:   440742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)