Query= MSMg01no080_l06.b1 MSMg01no080_l06.b1 CHROMAT_FILE:
MSMg01no080_l06.b1 PHD_FILE: MSMg01no080_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:41 2005
(350 letters)
>mm_chr19_19927346_19928095
Length = 750
Score = 598 bits (309), Expect = e-175
Identities = 336/347 (96%), Gaps = 4/347 (1%)
Strand = Plus / Plus
Query: 7 gaattcttttgtcatacatgtcttcactgaaactgcactgat----caatgtttatactt 62
|||||||||||||| | |||||||||||| |||||||||||| ||||||||||||||
Sbjct: 203 gaattcttttgtcaaagatgtcttcactggaactgcactgatcagacaatgtttatactt 262
Query: 63 tctaaatttattttatttaagataaagtgaaaatgtacaatatctggaacactatgaact 122
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctaaatttactttatttaagataaagtgaaaatgtacaatatctggaacactatgaact 322
Query: 123 cttcaaattttattttaatactttaaatgatataatatttaattatagaattattaaacc 182
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cttcaaatcttattttaatactttaaatgatataatatttaattatagaattattaaacc 382
Query: 183 aaaaatataagtaaactgactataataacaactgcaccctgttttctcaccaaccattca 242
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaaaatataaataaactgactataataacaactgcaccctgttttctcaccaaccattca 442
Query: 243 gtaggagcagaaatatgctggttcattagaaactttctctctttattaataatagcaagc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 443 gtaggagcagaaatatgctggttcattagaaactttctctctttattaataatagtaagc 502
Query: 303 tacagttataggaagaaaatggaaattctaacgatggaattggaagg 349
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tacagttataggaagaaaatggaaattctaacgatggaattggaagg 549
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space: 252681
Effective search space used: 252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_l06.g1 MSMg01no080_l06.g1 CHROMAT_FILE:
MSMg01no080_l06.g1 PHD_FILE: MSMg01no080_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:42 2005
(295 letters)
>mm_chr19_20089467_20090162
Length = 696
Score = 389 bits (201), Expect = e-112
Identities = 278/321 (86%), Gaps = 32/321 (9%)
Strand = Plus / Minus
Query: 1 caaaactaaggacatgagcttctaccttagctggacatagtgatgtcagagttggcagga 60
|||||||||||||||||| |||||| |||||||||| ||||||||||||||||||
Sbjct: 667 caaaactaaggacatgag------ccttagatggacatagtaatgtcagagttggcagga 614
Query: 61 tgtctcatgtgtcagaacaatc--------aggtagcaaacacgagatgaaagtaacaac 112
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 613 tgtctcatgtgtcagaacaatcatcgggttaggtagcaaacacgagatgaaagtaacaac 554
Query: 113 acaa---atactcgcagaagagtcaaaagagctgttatgc------------tta--ata 155
|||| |||| ||||||||| ||||||| |||||| ||| ||| |||
Sbjct: 553 acaaatgatacacgcagaagaatcaaaagggctgttttgcataaaatcccttttatgata 494
Query: 156 tagaactaaaatggcagataaagatcatgccacaggatctagaataacaaatggtgtcat 215
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tagaactaaaatggaacataaagatcatgccacaggatctagaataacaaatggtgtcat 434
Query: 216 ggattgttcattacatactaggttccatgtgtactttttgctgtattg-tttattatttc 274
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 433 ggattgttcattatatactaggttccatgtgtactttttgctgtattgatttattacttc 374
Query: 275 ataaatcatactttaggtaaa 295
|||||||||| ||||||||||
Sbjct: 373 ataaatcatagtttaggtaaa 353
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 696
Length adjustment: 9
Effective length of query: 286
Effective length of database: 687
Effective search space: 196482
Effective search space used: 196482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
