BAC Information

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BAC

Clone NameMSMg01-080L12
Chromosome19 (Build37)
Map Location 20,499,135 - 20,499,476
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik
Downstream geneE030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080L12.T7 (MSMg01no080_l12.b1)MSMg01-080L12.TJ (MSMg01no080_l12.g1)
ACCAG301488AG301489
length694694
length of high quality
(start - end)
342 (65 - 406)438 (71 - 508)
definitionCHROMAT_FILE: MSMg01no080_l12.b1 PHD_FILE: MSMg01no080_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:43 2005CHROMAT_FILE: MSMg01no080_l12.g1 PHD_FILE: MSMg01no080_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGATCCGCGGAATT
CTTTTTTTCCAAAATGTATATATGTAATAAATGATCCAACATTAAAATGT
CTTTTCCTCTATCTGCCTCCAAACCATTCAGCACATTAGAGCAGGTTCGT
CGCACCTGTTGCTCTTCCTCTCTTCTCCCACCCATCTCTCCTGCTCTGTC
CTTTCACCTCTATGTTTTGCTTTTGCAGTGGCTCCTGACCAATAGAAGCC
AATACAAGGAGATGGGCCTGAGCTCCTGAATATTCAAAATATTAGTTTTT
CCTTCCCACACTTTACTCAGGAGACCAAGGACTCCATGGCCAAATACAAA
ACAAAACAAACAAACAAACAAAAAACAAAAGGTAAGAATTTGTGAATATT
TGGCTGACACATTTCCTGAACGTTATGAAGGATCACATATTTAAAAGACT
AACATGTTCAAAGGTATTGAAGTAATAGAAACAGAATAGTCTCATTGTTA
GTTTCCATATTCTTAAGACACACCTGAACTTCTTGGTTCGCTTTGGTTGC
TGAAAGTTTCTGCCCGCAATACACTGGAGACTATTGTAAATTTCACAAAT
AACTTATCCACATTATTTCCTGCTTTGGGCTTTAAATCCCACTATTTCGT
TGTTTCACTACCCTTTTTGTTGTTACCTACGACCACCTCTTTTC
ATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATGTACATTGGAAAAGAGTTTCTAACTGAA
CACTATTAGTGCAGATAAAAAGATCAACTATTAATAAGTGGAACATCATG
AAACTGAAATGTTTCTGTAAGTGAAAAGTCACACCCATACAAACAGAAAC
AGCAGCCTACAGAATGGAAAAAGATATTTCCAAGGCCACATCCAACCGTA
GACTAATATATAAAATATACAAACAACTCAAGAAATTAGATATTGAAAAA
CAAAATCTACTTTTTCAAGTGGGATACAGATCTATAGAGAGAATTATCAA
TATCAGAATCTCAAATGATTGAAAAACACTGAAAGAAATATTCAACATCC
TTAGCCATCAGGGAAATGCAAATCAGAACTACTTTGACATTCCATCATAC
ACCTGCCTGAATAGCTAAAATCAATAACACACGTGACAGCTCATGCTGGC
AAGATATGGTGAAAGGGAGCCCTCTTCCAATACTGGTGGAAATAAAAACT
TATACAGTCACTTTGAAAATCAATATTTTGCTTCCTATAAAAGTTGGCAA
TCAATCTACCTCAAGGTCTAGATAAACCACTCTTGAGCATATACCCAAAG
GATGTTTCATTCCTACCACAGAGATGCTTGCTAGACCATGTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_l12.b1 MSMg01no080_l12.b1 CHROMAT_FILE:
MSMg01no080_l12.b1 PHD_FILE: MSMg01no080_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:43 2005
         (342 letters)



>mm_chr19_20498988_20499729
          Length = 742

 Score =  623 bits (322), Expect = 0.0
 Identities = 337/342 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtatatatgtaataaatgatccaacattaaaatgtcttttcctctatctgcctccaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgtatatatgtaataaatgatccaacattaaaatgtcttttcctctatctgcctccaaac 430

                                                                       
Query: 61  cattcagcacattagagcaggttcgtcgcacctgttgctcttcctctcttctcccaccca 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cattcagcacagtagagcaggttcgtcgcacctgttgctcttcctctcttctcccaccca 370

                                                                       
Query: 121 tctctcctgctctgtcctttcacctctatgttttgcttttgcagtggctcctgaccaata 180
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 369 tctctcctgctctgccctttcacctctatgttttgcttttgcagtggctcctgaccaaga 310

                                                                       
Query: 181 gaagccaatacaaggagatgggcctgagctcctgaatattcaaaatattagtttttcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaagccaatacaaggagatgggcctgagctcctgaatattcaaaatattagtttttcctt 250

                                                                       
Query: 241 cccacactttactcaggagaccaaggactccatggccaaatacaaaacaaaacaaacaaa 300
           ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 249 cccacacattactcaggagaccaaggactccatggccaaaaacaaaacaaaacaaacaaa 190

                                                     
Query: 301 caaacaaaaaacaaaaggtaagaatttgtgaatatttggctg 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 caaacaaaaaacaaaaggtaagaatttgtgaatatttggctg 148


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)