BAC Information

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BAC

Clone NameMSMg01-081D24
Chromosome19 (Build37)
Map Location 12,834,541 - 12,834,822
singlet/doubletsinglet
Overlap genenone
Upstream geneGif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1
Downstream geneZfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081D24.T7 (MSMg01no081_d24.b1)MSMg01-081D24.TJ (MSMg01no081_d24.g1)
ACCAG301896AG301897
length731734
length of high quality
(start - end)
305 (41 - 345)282 (75 - 356)
definitionCHROMAT_FILE: MSMg01no081_d24.b1 PHD_FILE: MSMg01no081_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:23 2005CHROMAT_FILE: MSMg01no081_d24.g1 PHD_FILE: MSMg01no081_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAATTTGCGGCGCTATACGACTCCTATTCCGAGAGGACCGCGGAATTC
TTTCAGTCCACTGGCATGTCAGTTGACATTGTCATCTTTTTTAGGTCTTG
TTTTGGCAACGGTTTTGCTGAGATTTCCTAGGTATAATTTTTTTCATATA
TTGTCTTAGTCACTGTTCTGTTGCTGTGAAGGGACACTATGACCATGGCA
ACTCTTAAAAAGGAAAGCATTTAATTGAGGGCTTACTTACAGTTTCAGAA
ATTTAGACTACTGTCATCATGGCAGGGAGTATGACAGCATGATATTCATG
ATAACTTCAGACAAAGGTACCTGTCCTTTCTTCCAAAAAGTGAGAAGTTT
AGTATAGGAGGCACCCATAAAACAGTAGGAATCTACCTCAAATTATGAAA
TAGGGCCTTTCAGACACAATGTCAGACATGGTTCTAGAGAAGTAGCTGAG
AGTTCTACAACCAGATCCACAGGCAGCAGGGACAGTTACGAGTAAATCAC
TAAGCTTGGTTTGGATTTCTGAAATCTTAAAGCCCACCCCCAGTTGCATA
CTTACCTCCAATAAGGCTAAACCTTCTAAATAGTGCTACTCTCTATTGAC
TAAGTATTCCAATCTATGAGTGATTGCCATTCTAATCCCTATCATCACTT
ACATAGAATCCACTATCTCATACCAAGTGTCCGTAACATTTCTCAAATCT
TCTTTCACAATAAGGCTGCCAATACGAAGCT
CCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATTGATTGTGACATGTGTGATATGC
GGTTTGGGAATTATTTAAAGAAAATGGTCTGGCCTCTAAACTTTGAGTTT
CATGGTCAAAAAATGAGCCCCGTGAATGCTGGTGCACATTAAAAAGTGAA
AATCAGTAAAAATCATCTCACCACAAAAGCTTTTAAAGAACTCTGACAGT
CACTGGTAAATAGAAGAAAAAAATGAAATATTTGGTGTTCAAAATAAATA
TCCATGTGCTTGAGATTCTTAATAAAAGAATGTTTCTTGGGTCAATCTAT
TTTGGGCACATAAAAAATAAAAGATGCACGAATGGTTTAAAATAGAGTTC
TCTTCTCAGCAAGACCACAAGATGCTTCCTTAATTTCTGTGCCTTTGGAT
GAACAAGGGGAATTTCAAGCGATTTCAACTCTGGATAAAATGTAATCCTC
TCAGCCAGGGTCAGAATCAATCAAGCATGCTGCGTAAAACTGCATGATGA
CAGGCCACTTGGGCAAAAATCCCACGGACAAGCACCCTGTAAAAGGAAAC
CACCACCATAACAAATGCTTCTGCCACACTGAGAACGTGTATTTGAATCT
ACCAGGTTGAACTTAACAAGTTTAATCTCATTCCACATGATTTATTCTCT
TCCAACTTTTGACCGAACAAGATCTCTGATGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_d24.g1 MSMg01no081_d24.g1 CHROMAT_FILE:
MSMg01no081_d24.g1 PHD_FILE: MSMg01no081_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:24 2005
         (282 letters)



>mm_chr19_12834341_12835022
          Length = 682

 Score =  538 bits (278), Expect = e-157
 Identities = 281/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattgattgtgacatgtgtgatatgcggtttgggaattatttaaagaaaatggtctggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aattgattgtgacatgtgtgatatgcggtttgggaattatttaaagaaaatggtctggcc 423

                                                                       
Query: 61  tctaaactttgagtttcatggtcaaaaaatgagccccgtgaatgctggtgcacattaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tctaaactttgagtttcatggtcaaaaaatgagccccgtgaatgctggtgcacattaaaa 363

                                                                       
Query: 121 agtgaaaatcagtaaaaatcatctcaccacaaaagcttttaaagaactctgacagtcact 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agtgaaaatcggtaaaaatcatctcaccacaaaagcttttaaagaactctgacagtcact 303

                                                                       
Query: 181 ggtaaatagaagaaaaaaatgaaatatttggtgttcaaaataaatatccatgtgcttgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggtaaatagaagaaaaaaatgaaatatttggtgttcaaaataaatatccatgtgcttgag 243

                                                     
Query: 241 attcttaataaaagaatgtttcttgggtcaatctattttggg 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 attcttaataaaagaatgtttcttgggtcaatctattttggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)