Query= MSMg01no081_e20.b1 MSMg01no081_e20.b1 CHROMAT_FILE:
MSMg01no081_e20.b1 PHD_FILE: MSMg01no081_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:27 2005
(208 letters)
>mm_chr19_41362864_41363471
Length = 608
Score = 360 bits (186), Expect = e-104
Identities = 195/198 (98%)
Strand = Plus / Minus
Query: 6 gaattcctattgttctcgctcgcttgctccctggaagaacagacgtggcaaggagaggca 65
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gaattcctattgcgcttgctcgcttgctccctggaagaacagacgtggcaaggagaggca 296
Query: 66 gtgtctgaaacaaagcacaattccaaagtgtcttctctttaacccttgctcccatggttt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gtgtctgaaacaaagcacaattccaaagtgtcttctctttaacccttgctcccatggttt 236
Query: 126 cccttgtctgcttcatactcacagggtcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 cccttgtctgcttcatactcacagggtcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 176
Query: 186 gtgtgtgtgtgtgtgtgt 203
||||||||||||||||||
Sbjct: 175 gtgtgtgtgtgtgtgtgt 158
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space: 119201
Effective search space used: 119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no081_e20.g1 MSMg01no081_e20.g1 CHROMAT_FILE:
MSMg01no081_e20.g1 PHD_FILE: MSMg01no081_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:27 2005
(473 letters)
>mm_chr19_41225201_41226071
Length = 871
Score = 787 bits (407), Expect = 0.0
Identities = 456/475 (96%), Gaps = 6/475 (1%)
Strand = Plus / Plus
Query: 1 tctaatttgttgacgtctgacttttccttcattgattaacttcctgtgtttctggtgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaatttgttgacgtctgacttttccttcattgattaacttcctgtgtttctggtgttt 260
Query: 61 taggactctttctagcctagccattttttttttttaaatttagaattttctgggaatcta 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 taggactctttctagcctagccattttttttt----aatttagaattttctgggaatcta 316
Query: 121 atacatgagtactagattcacacggtctctgttcctcccttattccttccaagtcctagt 180
|||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 317 atacgtgagtactagattcacacggtctctgctcctcccttattccctccaagtcctagt 376
Query: 181 gtcctggattcccttccacatttgctaatcctagaattactgttgtcctacacatatacg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtcctggattcccttccacatttgctaatcctagaattactgttgtcctacacatataca 436
Query: 241 ttaaaactttactgagtccatctagtgttggccatgtataaacaggtttggagacttctt 300
||||||| |||||||||||| |||||||||||||| | ||||||||||||||||||||||
Sbjct: 437 ttaaaaccttactgagtccacctagtgttggccatatgtaaacaggtttggagacttctt 496
Query: 301 ctaggagcactgtgtattgtggatcccggctatggacttgctttgtattttt--ctcagg 358
||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||
Sbjct: 497 ctaggagcactgtgtattgtggatcccggctgtggacttgctttgaatttttttctcagg 556
Query: 359 actcttgggattctatgggtcttgggtgagcttttcacatcagtttctgaactggaaggc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 actcttgggattctatgggtcttgggtgagcttttcacatcagtttctgaactggaaggc 616
Query: 419 tggagagtcacatctgcatgacggacagactttgtgactgaaactcttgcagaag 473
|||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 617 tggagattcacatctgcatgagggatagactttgtgactgaaactcttgcagaag 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 871
Length adjustment: 10
Effective length of query: 463
Effective length of database: 861
Effective search space: 398643
Effective search space used: 398643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
