Query= MSMg01no081_i12.b1 MSMg01no081_i12.b1 CHROMAT_FILE:
MSMg01no081_i12.b1 PHD_FILE: MSMg01no081_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:46 2005
(407 letters)
>mm_chr19_57192904_57193711
Length = 808
Score = 735 bits (380), Expect = 0.0
Identities = 401/408 (98%), Gaps = 1/408 (0%)
Strand = Plus / Plus
Query: 1 ttcaggctaatagaagaagtgtctgtcgctaccatgaaccgacaacatgtagaggttccc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagggtaatagaagaagtgtctgtcgctaccatgaaccgacaacatgtagaggttccc 260
Query: 61 agcgactccctggcttgcccaccggagagccagcaaatgcctccaaggggaaggatactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcgactccctggcttgcccaccggagagccagcaaatgcctccaaggggaaggatactt 320
Query: 121 ttgcaaagcacactttaccttgtgccagggtccgtgggtttgatcctgtttcttggctct 180
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 321 ttgcaaagcacactttaccttgtgccagggtccgggggtttgatcctgtgccttggctct 380
Query: 181 cctgggtagaactcctctgagctgccagctcagaacaccttggacatgctagacctcaac 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgggtagaacttctctgagctgccagctcagaacaccttggacatgctagacctcaac 440
Query: 241 ctggtagactgaggcccgtgctggctacctgcccagctggctcacacagcaggcttcact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggtagactgaggcccgtgctggctacctgcccagctggctcacacagcaggcttcact 500
Query: 301 aggctgcagccacgcacatctccccatagactcacacaggaaacaagagcagttgtggca 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 aggctgcagccacgcacatctccccagagactcacacaggaaacaagagcagttgtggca 560
Query: 361 ggctccc-cctctcaacgcctcctctccttgcctcactgactaaacac 407
||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctccctcctctcaacgcctcctctccttgcctcactgactaaacac 608
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 808
Length adjustment: 9
Effective length of query: 398
Effective length of database: 799
Effective search space: 318002
Effective search space used: 318002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no081_i12.g1 MSMg01no081_i12.g1 CHROMAT_FILE:
MSMg01no081_i12.g1 PHD_FILE: MSMg01no081_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:46 2005
(385 letters)
>mm_chr19_57362729_57363515
Length = 787
Score = 704 bits (364), Expect = 0.0
Identities = 381/387 (98%), Gaps = 2/387 (0%)
Strand = Plus / Minus
Query: 1 tgctttcagctttagaggaaag-naaacaggaactgagaacacacagccaggaagggagg 59
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 587 tgctttcagctttagaggaaagagaaacaggaactgagaacacacagccaggaagggagg 528
Query: 60 aggaaaaccttggttctcctgtgatttgaaacttgaacctgaacccaggtgcttcggtgc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aggaaaaccttggttctcctgtgatttgaaacttgaacctgaacccaggtgcttcggtgc 468
Query: 120 ctcttcccc-tagggaaccatcccataatgagacctatggtgtgatcctgagagaattac 178
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 467 ctcttccccttagggaaccatcccataatgagacctatggtgtgaccctgagagaattac 408
Query: 179 agtccctcttgaaacttcagctgctagatccaaaagatggctcttggtctcccaaaaagg 238
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 407 agtccctcttgaaacttcagctgctagatccaaaagatggctcttggtcccccaaaaagg 348
Query: 239 caaatttacagttgctagtaaggctgtacccctgttaccctcatctctcatctcctgtgc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 caaatttacagttgctagtaaggctgtacccctgttaccctcatctctcatctcctgtgc 288
Query: 299 ctcgagtccccagagaagaccctgattttattttctgttttgcatgtttgggaagtccat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ctcgagtccccagagaagaccctgattttattttctgttttgcatgtttgggaagtccat 228
Query: 359 ctggaaagcctgtgtgtgtgtgtgtgt 385
|||||||||||||||| ||||||||||
Sbjct: 227 ctggaaagcctgtgtgcgtgtgtgtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 787
Length adjustment: 9
Effective length of query: 376
Effective length of database: 778
Effective search space: 292528
Effective search space used: 292528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
