BAC Information

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BAC

Clone NameMSMg01-082B17
Chromosome19 (Build37)
Map Location 38,234,176 - 38,234,704
singlet/doubletsinglet
Overlap genePde6c
Upstream geneCpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4
Downstream gene5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082B17.T7 (MSMg01no082_b17.b1)MSMg01-082B17.TJ (MSMg01no082_b17.g1)
ACCAG302553AG302554
length827707
length of high quality
(start - end)
199 (36 - 234)529 (69 - 597)
definitionCHROMAT_FILE: MSMg01no082_b17.b1 PHD_FILE: MSMg01no082_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:30 2005CHROMAT_FILE: MSMg01no082_b17.g1 PHD_FILE: MSMg01no082_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAATTCCTT
CTGTACCACTGGCTGGGCCTCAAAACCACAGAGATCCATCTTCCTCTGCT
TACTGAGTGCTGAGACTAGAGACATAGGCCACCACACCCTGCTAATTTAT
TTATCTTTTGTTTTGTTTTGTTTTTTGTGTTTTTTTTTGTTTTGTTTTGT
TTTGTTTTGTTTTGTTTTGTTTTTGCTTTTCAACCACGCATTTCTTCTGT
CTATCCTTGCTTATTCTGCAATTCACCTTGCTCATCACCTTGGTTCCCAA
CATTATAAATTTTTTTTTTTCCCTGTTCCACCGATTGCTACTCCTTATTA
TTCATGTTTTTTCCCCCCTCTCCCTACCATTCTTTTATGACTCTTTGCGC
TATAACCCCCGTTTCCCCCCCCACCCTTCATGTAATCTTCCCTTCTATCC
CCCCTATTATCCTTTTACCATACCATTCTTTCCTATCTTCTCTCAATTTT
TATTTTATATACCTTCTTCTCCCCCCTCATAATTAATTAATATCCATATC
CTCCCCCTTCTCTTCCATACTATTTTTTCTACTCCCCCCAAATAATCCTT
TTTTATTTCCTCCTCCCCCCTCCATTGATTCCCCTTAAAATCCCTTTCCT
CTTTCTCCCCTTATTTTCTTCTTCATCCTCCCCCCCTTCCTCCTCTACAA
CTTTCGCTCTCATATTTCCCGCCCGTTTCCCTTATTTTTTCTCCTCATTC
ACCCCCCTTTTCCCGTTTCTTATTTCGCCTCATTTTTACCCCATTTTTTC
TATTCCTCGCACTTTATTCGTCCCCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACACCTCTATTGCTTTCCCATTTTAGAAGTT
TAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGC
TCCTGGCCATATTGGTAAGTGTTTCTTTGTTTCTTTCTGATCCTGGTGTC
TTTTTAAATAAAACCTATTTGGACACACTCTCATTTTTTTTCCAAGAAAA
TGTTGTTTCTTCTTCTTCCTCCTCCTCTCCCTCCCCCTCTCCCTCTTCTA
ACCTTATCCAAGGCGTAAAAGAAAGAAGTCTTCCATAGACTGGCTGTCTT
AGTCAGGGTTTCTATTCCTGCACAAAATATCATGATCAAGAAGCAAATTG
GGGAGGAAAGGGTTTATTCAGCTTACATTTCTGCATTGCTGTTTATCACC
AAAGGAAGTCAGGACTGGAACTCACACATGGAAGGAACCTGGAGTCAGGA
GCTGATGCAGAGGTCATGGAGGGATGCTGCTTACTGGCCTGCTTCCCCTG
GCTTGCTCAGATTGGTTTCTTATACAACCCAGGACTACCAGCCCAGGGAT
GGCACCACCCACAATGCCCCTCCCCCTGGTCTTGATCACTAATTGAGAAA
ATGCCTTACAGCTGGGTCTCATGTAGACATTTCCTCAAGGGAGGCTCCTT
TCTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_b17.g1 MSMg01no082_b17.g1 CHROMAT_FILE:
MSMg01no082_b17.g1 PHD_FILE: MSMg01no082_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:30 2005
         (529 letters)



>mm_chr19_38233976_38234904
          Length = 929

 Score = 1015 bits (525), Expect = 0.0
 Identities = 528/529 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacctctattgctttcccattttagaagtttaaagagaagttaaatgtagaggtaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacacctctattgctttcccattttagaagtttaaagagaagttaaatgtagaggtaatt 260

                                                                       
Query: 61  gaagagtgtgaagagagacagctcctggccatattggtaagtgtttctttgtttctttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagagtgtgaagagagacagctcctggccatattggtaagtgtttctttgtttctttct 320

                                                                       
Query: 121 gatcctggtgtctttttaaataaaacctatttggacacactctcattttttttccaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatcctggtgtctttttaaataaaacctatttggacacactctcattttttttccaagaa 380

                                                                       
Query: 181 aatgttgtttcttcttcttcctcctcctctccctccccctctccctcttctaaccttatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgttgtttcttcttcttcctcctcctctccctccccctctccctcttctaaccttatc 440

                                                                       
Query: 241 caaggcgtaaaagaaagaagtcttccatagactggctgtcttagtcagggtttctattcc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaggcggaaaagaaagaagtcttccatagactggctgtcttagtcagggtttctattcc 500

                                                                       
Query: 301 tgcacaaaatatcatgatcaagaagcaaattggggaggaaagggtttattcagcttacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcacaaaatatcatgatcaagaagcaaattggggaggaaagggtttattcagcttacat 560

                                                                       
Query: 361 ttctgcattgctgtttatcaccaaaggaagtcaggactggaactcacacatggaaggaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgcattgctgtttatcaccaaaggaagtcaggactggaactcacacatggaaggaac 620

                                                                       
Query: 421 ctggagtcaggagctgatgcagaggtcatggagggatgctgcttactggcctgcttcccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctggagtcaggagctgatgcagaggtcatggagggatgctgcttactggcctgcttcccc 680

                                                            
Query: 481 tggcttgctcagattggtttcttatacaacccaggactaccagcccagg 529
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggcttgctcagattggtttcttatacaacccaggactaccagcccagg 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)