BAC Information

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BAC

Clone NameMSMg01-083A24
Chromosome19 (Build37)
Map Location 31,943,301 - 31,943,847
singlet/doubletsinglet
Overlap gene1810073H04Rik
Upstream genePrkg1, LOC625995, Cstf2t, 8430431K14Rik
Downstream geneAsah2, EG668042, Sgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083A24.T7 (MSMg01no083_a24.b1)MSMg01-083A24.TJ (MSMg01no083_a24.g1)
ACCAG303284AG303285
length703700
length of high quality
(start - end)
178 (121 - 298)546 (72 - 617)
definitionCHROMAT_FILE: MSMg01no083_a24.b1 PHD_FILE: MSMg01no083_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:41 2005CHROMAT_FILE: MSMg01no083_a24.g1 PHD_FILE: MSMg01no083_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTCTATTCCCCCTAGATATGACTACAGAGTCAGATCTCGTGATGACTAAT
GTTAATTGTCAAATTTCCAAGAATTTAGAATCACCTAGGAGATGGGCCTC
TGTGAATCCCTGTGGAAAATCATCTGGATCATGTTAATTGATGTAAAACC
CAGCTGATTTTAAACTTACTTACGTACTGTATGTATGTATATATGTATGT
ATGTATGTATGTATGTATGTATAGGAACTAGACATGTATTTTACGAGAGA
CTAGTGTGGTATAATTCCCAGTAAAGTTTACCATTGAGGCATATAGTTCT
ACAAGCTTTTCTACTTCAATTAAATTCATTATTTAGTAATTTCATATGTG
TCTAGAATGCATTCCAATTGTTCACACCCCACTGTCTCTTTTTTACTTAT
TTATTTATTTATTTATTTATTTACTTATTTATTTATTTATTCATTATGTA
TTTTCCTCAATTACATTTCCAATGCTATCCCACAAGTTCCCTATACCCTC
TACCCCAACTTTTTTACTCATCCATTCTTATTTTTTTGGCCCCTGTCGTT
CCCCTGTTTTTGTGCATTAAATGTTTGTGTTGTTCAATGGTACCCCCTTT
TCTATTTATCCCTTTATTACGTCTTTTTTTGTACCATACGTTACCAGTAT
CAC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCATAATCAAGGAACCTTTTCCGGGTGGG
GAACCTCAGAAATTGCTCAGGTATGGCCCATGCTTTTTGTTTGTATTTTC
TGTTTCAATTCTGGGTTGTAGTGTCTGGTAGATTGCATGAAAACAACTTG
TGCTCTTAACTATCTCTGAGCCTAATGCAGAGAATTGTCGTCGTTTGGGA
ATGAAACCAACCGGAAAGCTAAACAGTGTCTTAGACTGAGCGGGGATGAA
TTTCATGGTATACTTCTTGCTTGGGTATGCTTCCACAACTTGTGGGAAGT
GGAGTCATCCGTGGGTTCACAAGTGGAGCCCATGTGCTGCAAACCTAACC
TCCAGCTAGCTGTCGGGGAGAGCTGTGTTTCACTGTCTGTCCTGATCTCT
AGGACCCGACAACAGAAATGTGATTAAGACATAGTTTCACATCTCCAACA
GCCTTCTGAGTTCTGTGTATCCTCTAATACTTTAGACACCACCTATTCTA
TTAACTTCTGTGTGCTACTACACTATAAAAAAATCAGGATAAATTTCTTG
CTATTTCTTCTGCTATTAGCCTGCTAACCAAAAATAATATCCTAAGCTAC
TTTCTTTTGAGTCTATCAAGGAAAAAAAACATTATGCAAAAGTGTGTGTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_a24.g1 MSMg01no083_a24.g1 CHROMAT_FILE:
MSMg01no083_a24.g1 PHD_FILE: MSMg01no083_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:41 2005
         (546 letters)



>mm_chr19_31943101_31944047
          Length = 947

 Score =  986 bits (510), Expect = 0.0
 Identities = 538/548 (98%), Gaps = 3/548 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccataatcaaggaaccttttccgggtggggaacctcagaaattgctcaggtatggcccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccataatcaaggaaccttttccgggtggggaacctcagaaattgctcaggtatggcccat 260

                                                                       
Query: 61  gctttttgtttgtattttctgtttcaattctgggttgtagtgtctggtagattgcatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctttttgtttgtattttctgtttcaattctgggttgtagtgtctggtagattgcatgaa 320

                                                                       
Query: 121 aacaacttgtgctcttaactatctctgagcctaatgcagagaattgtcgtcgtttgggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaacttgtgctcttaactatctctgagcctaatgcagagaattgtcgtcgtttgggaa 380

                                                                       
Query: 181 tgaaaccaaccggaaagctaaacagtgtcttagactgagcggggatgaatttcatggtat 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tgaaaccaaccggaaagctaaacagtgtcttagactgagcggggataaatttcatggtat 440

                                                                       
Query: 241 acttcttgcttgggtatgcttccacaacttgtgggaagtggagtcatccgtgggttcaca 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttcttgagtgggtatgcttccacaacttgtgggaagtggagtcatccgtgggttcaca 500

                                                                       
Query: 301 agtggagcccatgtgctgcaaacctaacctccagctagctgtcggggagagctgtgtttc 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 agtggagcccatgtgctgcaaacctaacctccagctagctgttggggagagctgtgtttc 560

                                                                       
Query: 361 actgtctgtcctgatctctaggacccgacaacagaaatgtgattaagacatagtttcaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgtctgtcctgatctctaggacccgacaacagaaatgtgattaagacatagtttcaca 620

                                                                       
Query: 421 tctccaacagccttctgagttctgtgtatcctctaatactttagacaccacctattctat 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 tctcccacagccttctgagttctgtgtatcctctaatactttagacaccacctattcaat 680

                                                                       
Query: 481 taacttctgtgtgctactacactataaaaaaa--tcaggataaatttcttgctatttctt 538
           ||||||||||||||||||||| ||||||||||  |||||||||||| |||||||||||||
Sbjct: 681 taacttctgtgtgctactacattataaaaaaaaatcaggataaatt-cttgctatttctt 739

                   
Query: 539 ctgctatt 546
           ||||||||
Sbjct: 740 ctgctatt 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space:   502232
Effective search space used:   502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)