Query= MSMg01no083_i24.b1 MSMg01no083_i24.b1 CHROMAT_FILE:
MSMg01no083_i24.b1 PHD_FILE: MSMg01no083_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:19 2005
(533 letters)
>mm_chr19_3552625_3553562
Length = 938
Score = 965 bits (499), Expect = 0.0
Identities = 523/533 (98%), Gaps = 7/533 (1%)
Strand = Plus / Plus
Query: 7 gaattctatactatctctcctggcttacca-ctcctgaatctaaag-aacaatcaaagca 64
|||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 207 gaattctatactatct-tcctggcttaccaactcctgaatctaaagtaacaatcaaagca 265
Query: 65 gtatggcagcaatggttggaggatgcaaaagagagaaagaagcaaaactgataacagtat 124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 266 gtatggcagcaatggttggaggatgcaaaagagagaaagaagcaaaactgaaaacagtat 325
Query: 125 atgtgtacacattatctgcttgatgtcagtaagaactgagagagtgggatcactagggct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atgtgtacacattatctgcttgatgtcagtaagaactgagagagtgggatcactagggct 385
Query: 185 actattgctaaaacagagaaataagctgggcattgaaggagtggcaaaagctagacagac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 actattgctaaaacagagaaataagctgggcattgaaggagtggcaaaagctagacagac 445
Query: 245 tactgaagaaacaagacaagggctcagatcctagcttggaaaaaattgaactaaagatat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tactgaagaaacaagacaagggctcagatcctagcttggaaaaaattgaactaaagatat 505
Query: 305 ccaaactctgacatgaggtcactgaacaatggtagcaaagcccccaccctcaaaaaaaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ccaaactctgacatgaggtcactgaacaatggtagcaaagcccccaccctcaaaaaaaaa 565
Query: 365 aaaa----gtctgcctaggattccatcaagaacgtcaactgaagggagcagtgaatctct 420
|||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 566 aaaaaaaagtctgtctaggattccatcaaggacgtcaactgaagggagcagtgaatctct 625
Query: 421 taaggatctgacttctaggaaattatatttttacatcagaaagcacaaaatgagaaaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 taaggatctgacttctaggaaattatatttttacatcagaaagcacaaaatgagaaaggt 685
Query: 481 tctcagagagcaagactgctcaggaatagggaataaggtcagggccacagtag 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tctcagagagcaagactgctcaggaatagggaataaggtcagggccacagtag 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 938
Length adjustment: 10
Effective length of query: 523
Effective length of database: 928
Effective search space: 485344
Effective search space used: 485344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_i24.g1 MSMg01no083_i24.g1 CHROMAT_FILE:
MSMg01no083_i24.g1 PHD_FILE: MSMg01no083_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:19 2005
(558 letters)
>mm_chr19_3714754_3715711
Length = 958
Score = 845 bits (437), Expect = 0.0
Identities = 449/453 (99%)
Strand = Plus / Minus
Query: 1 gctacaagctggggtaaggcagctgggccgtgaagacgctttgatggctcttggatccct 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 453 gctacaagctggggtaaggcagctgggccgtgaagacgccttgatggctcttggatccct 394
Query: 61 ccgatctgctgatgccctaaagatgctaccagcatcttcagcaggttcagggagttccct 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ccaatctgctgatgccctaaagatgctaccagcatcttcagcaggttcagggagttccct 334
Query: 121 gtgcctcatccctggattagaagtctgctggggagttcaaggagaaaagatgtgacaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtgcctcatccctggattagaagtctgctggggagttcaaggagaaaagatgtgacaggc 274
Query: 181 agttctagcactaaggagggcctcagctccctgaacacactccagtccttgtgcctacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 agttctagcactaaggagggcctcagctccctgaacacactccagtccttgtgcctacac 214
Query: 241 tacaaatctgggacaagagtggacaaaccttttctataaagggccagggagcaaatattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tacaaatctgggacaagagtggacaaaccttttctataaagggccagggagcaaatattt 154
Query: 301 cagacaggagaacatgcaggctctctctcaggtactaacttagtcctgcctgccacagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 cagacaggagaacatgcaggctctctctcaggtactaacttagtcctgcctgccacagca 94
Query: 361 gtgaacagacagccttggatggcagcatctgtattcacacagtaggcactccaggcaaca 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 93 gtgaacagacagccttggatggcagcatctatattcacacagtaggcactccaggcaaca 34
Query: 421 catcccacacactatagtttaccagctgtggtt 453
|| ||||||||||||||||||||||||||||||
Sbjct: 33 cagcccacacactatagtttaccagctgtggtt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
