BAC Information

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BAC

Clone NameMSMg01-083L20
Chromosome19 (Build37)
Map Location 27,852,854 - 27,853,250
singlet/doubletsinglet
Overlap geneRfx3
Upstream geneGm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612
Downstream geneLOC666997, LOC433235, Glis3, EG434460, EG627788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083L20.T7 (MSMg01no083_l20.b1)MSMg01-083L20.TJ (MSMg01no083_l20.g1)
ACCAG303777AG303778
length732725
length of high quality
(start - end)		397 (70 - 466)426 (72 - 497)
definitionCHROMAT_FILE: MSMg01no083_l20.b1 PHD_FILE: MSMg01no083_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:33 2005CHROMAT_FILE: MSMg01no083_l20.g1 PHD_FILE: MSMg01no083_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCTGAGATTCCAGCAAACAGCAGTATTGTAGAAAGGTAGACTGTAGGA
GGGAACCAAGCTCCAAAGGGCACCCTCCACCTGAGTCCTGGGGGAAATAC
CACAGGGAAAGGCAAAGCAGTACTCTCAAGTGGGCTCCCTGCTGTGGCTT
TGGCCTGGTGACAATGGTCAATATTCCTACATTTGAAACTGTTTCCTTTC
CAAAGCAGCTGTGGCCTGAATTGCCTTGCACTCCACTAAGCACATGCTCT
CTAGTGACTGGTTTTTAGAGATTTGAAACATTGTGAAGATATGTGTGCTA
CTATATCCCCAGGGGAGAAAGAGCATGAATGGTTAGAGTTGTATGTTAAG
TATGCTGCAGCGTGTGGGGATATATAGGCAGATTGCCACCGCCCCAGGCC
AGCCTCAAAGAGCATTAGCAATGAAAACTGCCATGGTATGGAGGAAAGTG
ACATAAATCTTTGTCTTTTTGTCAGCTTCAGTGACAACTCTGACACAATA
CATAGAAAGCCACATGCCTAGTAGACCCCTCCCCAGAACCCCCTACCTGT
TCCACCCACATGCACATCTCCTGCACACCACAGGGCGCAATCTACTGTAT
GTCTTGCCCTCTCCCTTGCCTCACCTCGATCCCCCCTGCACCACCTGCTA
TCTCCCCCACTCCTCCCCTTCGCCACCTCTCT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCATTCAGGCCCATAGCCATTTTAGTTA
GTCCATTTGTTTCCTTGGCTTTATGGTTTTTTGAATACTTTGTGCATTCT
GGATAGTAATTCTCTATCAGACGCGTAATGCGTAAAGATTCCCACCTTGT
AGGCTTCCTCTTCACTCAATTGATTGTTTCCTTTACTGTACAAAAGCCAT
TGAGTTTTAGGAGGCCCAGGCCCCATAATTCCTGAATAAGGGTGAATGGA
GACTCATTCGGAAAGCCTGTTCCTATACTTCTATCTTGCCCTGCCTGTGA
TTTCTTTTATCCTTCTTAGCATTTCCGTCTTTGGTCCATTTGGAGTTGAT
GTTTGTGCGGGATGATGAATATGCAGCCAGTTTCATCCTGTTACACTTGA
ACATATTCCTGGCACGATTTGATGAGGATGGTTCTTTTTCTCCAGAGTGA
ATTTTGGAGCATCTTTGTCAAATGTTATATGTCCATAAGGACCCATGTAC
TCATTTTTGTGTGTTCAAATTTGTTCCATTGAATCTACATGACTGCTTTT
TAAAAATAATGAGTTGTGCAAATTAACATAATAGTAAAAAATAAATACAA
AATTTAAAAATGTTAAAAAAAAATAAGAAAAATCAATCCAAAACATACTA
TAAACGAAAAGATAAAAAAGAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_l20.b1 MSMg01no083_l20.b1 CHROMAT_FILE:
MSMg01no083_l20.b1 PHD_FILE: MSMg01no083_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:33 2005
         (397 letters)



>mm_chr19_27852654_27853450
          Length = 797

 Score =  768 bits (397), Expect = 0.0
 Identities = 397/397 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcagtattgtagaaaggtagactgtaggagggaaccaagctccaaagggcaccctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cagcagtattgtagaaaggtagactgtaggagggaaccaagctccaaagggcaccctcca 538

                                                                       
Query: 61  cctgagtcctgggggaaataccacagggaaaggcaaagcagtactctcaagtgggctccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 cctgagtcctgggggaaataccacagggaaaggcaaagcagtactctcaagtgggctccc 478

                                                                       
Query: 121 tgctgtggctttggcctggtgacaatggtcaatattcctacatttgaaactgtttccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgctgtggctttggcctggtgacaatggtcaatattcctacatttgaaactgtttccttt 418

                                                                       
Query: 181 ccaaagcagctgtggcctgaattgccttgcactccactaagcacatgctctctagtgact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ccaaagcagctgtggcctgaattgccttgcactccactaagcacatgctctctagtgact 358

                                                                       
Query: 241 ggtttttagagatttgaaacattgtgaagatatgtgtgctactatatccccaggggagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ggtttttagagatttgaaacattgtgaagatatgtgtgctactatatccccaggggagaa 298

                                                                       
Query: 301 agagcatgaatggttagagttgtatgttaagtatgctgcagcgtgtggggatatataggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agagcatgaatggttagagttgtatgttaagtatgctgcagcgtgtggggatatataggc 238

                                                
Query: 361 agattgccaccgccccaggccagcctcaaagagcatt 397
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 agattgccaccgccccaggccagcctcaaagagcatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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