Query= MSMg01no083_n01.b1 MSMg01no083_n01.b1 CHROMAT_FILE:
MSMg01no083_n01.b1 PHD_FILE: MSMg01no083_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:39 2005
(352 letters)
>mm_chr19_38233966_38234718
Length = 753
Score = 669 bits (346), Expect = 0.0
Identities = 349/350 (99%), Gaps = 1/350 (0%)
Strand = Plus / Plus
Query: 4 ggaattccacacctctattgctttcccattttagaagtttaaagagaa-ttaaatgtaga 62
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 204 ggaattccacacctctattgctttcccattttagaagtttaaagagaagttaaatgtaga 263
Query: 63 ggtaattgaagagtgtgaagagagacagctcctggccatattggtaagtgtttctttgtt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtaattgaagagtgtgaagagagacagctcctggccatattggtaagtgtttctttgtt 323
Query: 123 tctttctgatcctggtgtctttttaaataaaacctatttggacacactctcatttttttt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctttctgatcctggtgtctttttaaataaaacctatttggacacactctcatttttttt 383
Query: 183 ccaagaaaatgttgtttcttcttcttcctcctcctctccctccccctctccctcttctaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccaagaaaatgttgtttcttcttcttcctcctcctctccctccccctctccctcttctaa 443
Query: 243 ccttatccaaggcggaaaagaaagaagtcttccatagactggctgtcttagtcagggttt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccttatccaaggcggaaaagaaagaagtcttccatagactggctgtcttagtcagggttt 503
Query: 303 ctattcctgcacaaaatatcatgatcaagaagcaaattggggaggaaagg 352
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctattcctgcacaaaatatcatgatcaagaagcaaattggggaggaaagg 553
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 753
Length adjustment: 9
Effective length of query: 343
Effective length of database: 744
Effective search space: 255192
Effective search space used: 255192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_n01.g1 MSMg01no083_n01.g1 CHROMAT_FILE:
MSMg01no083_n01.g1 PHD_FILE: MSMg01no083_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:39 2005
(440 letters)
>mm_chr19_38368028_38368872
Length = 845
Score = 779 bits (403), Expect = 0.0
Identities = 433/445 (97%), Gaps = 5/445 (1%)
Strand = Plus / Minus
Query: 1 ttagaaataagagtaagaaaaatttggagtgtaaaagagaaaggggtctggtgacagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 645 ttagaaataagagtaagaaaaatttggagtgtaaaagagaaaggggtctggggacagagg 586
Query: 61 tggcctttaaaggtgtcagttgactttcagctgggatgagca----aacaataggtcctt 116
||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 585 tggccttcaaaggtgtcagttgactttcagctgggatgagcagaggaacagtaggtcctt 526
Query: 117 gccttgacccaagcctgccttgatcagtctcattaggagattctccaaatcagctccaga 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gccttgacccaagcctgccttgatcagtctcattaggagattctccaaatcagctccaga 466
Query: 177 gtgcagtgcaaactggtgtgagcagggaatggggggcaggcttgagttctggcagttttc 236
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gtgcagtgcaaagtggtgtgagcagggaatggggggcaggcttgagttctggcagttttc 406
Query: 237 tatgaagccggttcctcttgggtcagaatgatctccaagtcccaaccttgctactgaatc 296
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 405 tatgaagccggttcctcttgggttagaatgatctccaagtcccaaccttgctactgaatc 346
Query: 297 acatctccgtaccttcccctgtgaaaggcttgtggcttcatctttaacaagagtcagatg 356
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 acatctccataccttcccctgtgaaaggcttgtggcttcatctttaacaagagtcagatg 286
Query: 357 attctggaagcagtgctctaagccacacgcttaagaatcattgcctctgacaggggtttt 416
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 attctggaagcagtgctgtaagccacacgcttaagaatcattgcctctgacaggggtttt 226
Query: 417 tctaggatgt-ccagagacacagag 440
|||||||||| ||||||||||||||
Sbjct: 225 tctaggatgtcccagagacacagag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 845
Length adjustment: 9
Effective length of query: 431
Effective length of database: 836
Effective search space: 360316
Effective search space used: 360316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
