Query= MSMg01no083_o13.b1 MSMg01no083_o13.b1 CHROMAT_FILE:
MSMg01no083_o13.b1 PHD_FILE: MSMg01no083_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:47 2005
(524 letters)
>mm_chr19_49115626_49116549
Length = 924
Score = 973 bits (503), Expect = 0.0
Identities = 515/519 (99%), Gaps = 2/519 (0%)
Strand = Plus / Plus
Query: 7 gaattcatctg-tcacggtctttagttggagtcttttaggatatacatgtgctcattctt 65
||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcatctggt-atggtctttagttggagtcttttaggatatacatgtgctcattctt 265
Query: 66 gttcttgctgttagcttttgttttcttttgtctgtgggcatggaattcacatcattctgc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gttcttgctgttagcttttgttttcttttgtctgtgggcatggaattcacatcattctgc 325
Query: 126 ctgactggagtctaagctcccaaagggaagtacatctatttacatgcattgccatgtagt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctgactggagtctaagctcccaaagggaagtacatctatttacatgcattgccatgtagt 385
Query: 186 aacagatataagatagtgttcaacaattcactcattgtatcctctgttttgtttttgtct 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aacagatataagatagtgttcaacaattcactcattgtatcctctgttttgtttttgtct 445
Query: 246 ttgtttttgtgtactctgagtaaaaaatatattacagcctgggaaacactcttatggctg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttgtttttgtgtactctgagtaaaaaatatattacagcctgggaaacactcttatggctg 505
Query: 306 gcatcccagatccactgtcagtcaaagaaaagaaaaatctacttcaaattcatttgtaat 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gcatcccagatccactgtcagtcaaagaaaagaaaaatctacttcaaattcatttgtaat 565
Query: 366 cccattgcatctgctcttgagtattccatgggcaccaagggattctcaaattcaagcata 425
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cccattggatctgctcttgagtattccatgggcaccaagggattctcaaattcaagcata 625
Query: 426 catttggttgaacttattaaagtacaaattctgtagattttatgcagggctctggaatgg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 catttggttgaacttattaaagtacaaattctgtagattttatgcagggctctggaatgg 685
Query: 486 aattcagcactacatacagatgcttgttttctatgatac 524
|||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aattcagcactacatacagatgcttgttttctatgatac 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_o13.g1 MSMg01no083_o13.g1 CHROMAT_FILE:
MSMg01no083_o13.g1 PHD_FILE: MSMg01no083_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:47 2005
(589 letters)
>mm_chr19_49272294_49273282
Length = 989
Score = 586 bits (303), Expect = e-171
Identities = 338/355 (95%), Gaps = 11/355 (3%)
Strand = Plus / Minus
Query: 246 ttcgaacagtgctattagctgtggcca--agtattcaagcacaaggacctataggaggca 303
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 989 ttcgaacagtgctattagctgtggctaatagtattcaagcacaaggacctataggaggca 930
Query: 304 gtttatgttgaaccacagggagagagggaaagattggggaagaagagaaggaagcaatga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gtttatgttgaaccacagggagagagggaaagattggggaagaagagaaggaagcaatga 870
Query: 364 tagagctacatgaaaaccaaacagtggagaat---ttattattattattattattattac 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 869 tagagctacatgaaaaccaaacagtggagaatttattattattattattattattattac 810
Query: 421 ------tattattattatcttttgtactgtgtttgtttgacttgttttaattaagattgt 474
||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct: 809 tattattattattattatcatttgtactgtgtttgtttgacttgttttaattaagtttat 750
Query: 475 cttattagttttggcttgatgtttgtctagctttcatttttctgtcatgataagactgtc 534
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 749 cttattagttttggcttgatgtttgtctagatttcatttttctgtcatgataagactgtc 690
Query: 535 actaatttaagctgataaattactgccactcattgttttataccacagttctgta 589
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 689 actaatttaagctgataaattactgcaactcattgttttataccacagttctgta 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
